Bicyclus anynana (squinting bush brown): 112052164
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Entry
112052164 CDS
T07476
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bany
Bicyclus anynana (squinting bush brown)
Pathway
bany03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bany00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112052164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bany03019
]
112052164
03041 Spliceosome [BR:
bany03041
]
112052164
03009 Ribosome biogenesis [BR:
bany03009
]
112052164
03016 Transfer RNA biogenesis [BR:
bany03016
]
112052164
Enzymes [BR:
bany01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112052164
Messenger RNA biogenesis [BR:
bany03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112052164
Spliceosome [BR:
bany03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112052164
Complex C
U4/U6.U5 tri-SnRNP related factors
112052164
Ribosome biogenesis [BR:
bany03009
]
Eukaryotic type
Pre-60S particles
Helicases
112052164
Transfer RNA biogenesis [BR:
bany03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112052164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112052164
NCBI-ProteinID:
XP_052739795
LinkDB
All DBs
Position
1:complement(14471184..14513904)
Genome browser
AA seq
1031 aa
AA seq
DB search
MGDVDNLFDCFDDNESSIKDLNIKEDEESSVPVNQPIVSTKRPHEEVQYADTSKRVKHED
EDVEEITSDINVDLLASRIVIHTLETHEGCTHEVAVPPNHDYTPLVPITGEPAKQYSFIL
DPFQNEAILCINNLQSVLVSAHTSAGKTVVAEYAIALSLKNNQRVIYTTPIKALSNQKYR
EFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDK
ERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQHYI
FPAGGDGIHLVVDENGQFKEDNFNTAMAVLSNAGEASKGDQRGRKGGMRGNTNANIFNIV
KMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEEDRKL
PQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTVVF
TNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPAVVKDMVQGKADP
INSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKVKQKEYDALTIE
KEHSIATYCNVRSELDLLGAQFRSFITRPEYLKPFLQPGRLVKVKTEKYEYDWGIIVNFR
HKMGKDKKNRDNPLTADTVIIVDILLHVKKAKPDDADPNIPCPPGETGDVEVVPVLHTLI
YQISSLRVYYPKDLRPADNRKAVLKTISEVKKRFTDGPPLLNPIKDMKIDDPVFKQCVDR
IQVLEESLYAHPLHKDKNRGALTAAYDKKQEVYEELSQLKSELKKAKSILQMEELKKRKR
ILRRLGYCTFADVIELKGRIACELSSADELLLTELIFNGVFNALSPEQSAALVSCFVCDE
NSSQASSTGDELKGVLRQLQEYARRIAKASIEAKMDLDEDEYVGKFKCTLMDVVLSWAKG
ATFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQASKNIGNTDLESKFSQAIKMLKRDIVF
AASLYIHPHVN
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatgtggataacttatttgattgtttcgatgataatgaatcctctattaaggat
ctcaacattaaggaagatgaggagtcttcagtacctgttaaccaacccatagtgagtact
aagcgtccacatgaagaagtacaatacgcagatacctcaaaaagagtgaaacatgaagac
gaagatgttgaagaaatcactagtgatataaatgtagatctactagcctcaagaatagtt
atccacacattggaaacacatgaaggatgtactcatgaggtagcagtcccaccaaaccat
gactatacacccctagtaccaataactggagagcccgccaaacagtacagtttcatattg
gacccctttcagaatgaagccatattatgtatcaataacttacaatctgtattagtatct
gcacatacttctgctgggaaaactgtagttgcagaatatgcaatagcactctctttgaag
aacaatcagagggtgatatacacaacgccaatcaaagcactatcaaatcagaaatacaga
gagttttctgaggagttccatgacgttgggctgatcactggtgatgtgacaatcaatcca
tctgcttcctgccttattatgacgacagaaattctgcgaaatatgttgtacagaggttct
gaaataatgagggaggttggttgggttgtgtttgatgagatccattacatgagggacaaa
gagagaggtgttgtttgggaagaaaccctgatcctgctgcccgacaacgtgcactacgtg
ttcttgtcagccactatccccaacgcgcggcagttcgcggagtgggtgtgccgcctgcac
tcgcagccgtgccacgtggtgtacacggagtaccggcccacgccgctgcagcattacata
ttccctgcgggcggggatggcatccatcttgttgtggacgaaaacggtcaattcaaagaa
gacaacttcaacactgcgatggcggtgctaagtaacgcaggggaggcgagcaagggcgac
cagcgcggccgcaagggcggcatgcgcggcaacaccaacgccaacatattcaacatcgtc
aagatgatcatggagcgcaacttcgcgcccgtcatcatattcagcttcagcaagaaggac
tgcgagctgtacgccatgcaaatggccaaattggatttcaatacaattgaggaaaagaag
ttagtagacgaagtattcaataacgcaatggacgtgctgtcggaggaagaccgcaagctg
ccgcaggtagaaaacgtaatacctttgctcagacgcggtattggtatacatcatggcggc
ttgctgcccatattgaaggagactattgagatattgttcggcttaggacttatcaaggcg
cttttcgctactgaaacgtttgccatgggcctcaacatgcccgccaggactgtggtcttc
actaactgtcagaaattcgatggaaaggatttccgctttataacgtcaggggagtacatc
cagatgtccgggcgcgcgggtcggcgaggactggacgacaagggcattgtcatactgatg
atcgaccagaaggtgacccccgccgtagtgaaggacatggtgcagggcaaggcggacccc
atcaactctgccttccatcttacatacaacatggtcctgaatttattgagagttgaagaa
atcaatccggaatacatgttggagagaagttttttccaattccaaaatcaggcggccata
ccagatttgattgacaaggtaaaagtcaagcagaaggaatatgacgcattgaccatagag
aaggagcattcaatagccacgtactgcaacgttcgctcggagctcgatctgctgggggcg
cagttccggtccttcatcactcgccccgagtacttgaagcctttcctgcagccagggagg
ctggtcaaagttaaaacagagaagtacgagtacgactggggcatcatagtcaacttccgc
cacaagatgggcaaagacaagaagaacagagacaacccgctcacggccgacaccgtcatc
attgtggacattctgctgcacgtgaagaaggccaagcctgatgacgccgaccccaatata
ccttgcccgcctggagagacaggcgatgtagaagtagttccagtactccacaccctcata
taccagatcagctcactccgagtgtactaccccaaggacctgagacccgcagacaatcgc
aaggccgtgttgaagaccatcagcgaagtcaagaaacgctttacagatggacctcctttg
ttaaatcctataaaagacatgaaaatcgatgatccagtcttcaaacaatgtgtagataga
atacaagttttagaagagagtttatacgcacatcccttacacaaagataaaaaccgtgga
gccctaacagccgcgtacgataaaaaacaggaagtatacgaagaactgtcccaactcaag
tccgaattaaagaaagcgaaaagcatactacaaatggaggaattaaagaaaagaaaacgt
attctaaggcgattgggttactgcacattcgctgatgttatagaattaaaaggacggata
gcctgtgaattaagtagcgcggatgagttactgctaacagagctgatattcaacggcgtg
ttcaacgctctaagcccggagcagagcgcagcactcgtcagctgcttcgtgtgcgacgag
aactcctcgcaggcctcctccacgggagacgagctcaaaggcgtgctgagacagctgcag
gaatacgcgcgccgtatcgccaaggcctcgatcgaggctaagatggacttggacgaggac
gaatacgtcggcaagttcaagtgcacactgatggacgtcgtgctgtcgtgggccaaggga
gccaccttcttacagatttgcaaaatgactgatgtctttgaaggttcaataatccgatgc
atgcgtcgcttggaagaagtactgagacagttgtgtcaagcgtcgaaaaacattggcaat
acggatctagagagcaagttcagccaagcgatcaagatgctgaaacgcgacatcgtgttc
gcggccagtctatacattcatccccacgtcaattag
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