Bicyclus anynana (squinting bush brown): 112056176
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Entry
112056176 CDS
T07476
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bany
Bicyclus anynana (squinting bush brown)
Pathway
bany03013
Nucleocytoplasmic transport
bany03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bany00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112056176
03015 mRNA surveillance pathway
112056176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bany03019
]
112056176
Enzymes [BR:
bany01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112056176
5.6.2.5 RNA 5'-3' helicase
112056176
Messenger RNA biogenesis [BR:
bany03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112056176
mRNA cycle factors
Common to processing body (P body) and stress granule
112056176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
ATPase
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
nSTAND_NTPase5
UvrD_C_2
AAA_5
zf-B_box_Trim66
Motif
Other DBs
NCBI-GeneID:
112056176
NCBI-ProteinID:
XP_023952317
UniProt:
A0A6J1P2K2
LinkDB
All DBs
Position
17:10404375..10414436
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AA seq
1035 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEEADLIGADTQGSEFEFTDFTIPSQSQTPASQHDHGLSTSNQ
VNGLGRSDLSSKVSSVANAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGVGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVGPESAPHAPVPHAAFAAHR
GPRAPAAGPARARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQ
DSTYQGGFRARCGQY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggtccgagctctcaaacgctgacattcctcgagactgaagag
gctgatctaatcggtgctgacacccagggttccgagtttgaatttacggatttcactatc
ccgtcccagagccaaacacctgcgtctcaacacgaccacggtttatccacgtccaaccaa
gtgaatggtctaggacgatcagaccttagctctaaagtttcgagtgtcgccaatgctata
gcagagttacaatttgaggaggaagatgaagctctttacagcagcaaagaacttccagac
cacgcttgcaagtactgtggcattcatgaccctgccacagttgttatgtgcaatatctgt
aacaagtggttctgcaatggacggggcaacacttcagggtcccatattattaaccacctg
gtgagggctaaacacaaggaagccgcattacaccgcgatggcccgcttggtgaaacccta
cttgaatgctactcatgcggagcacgcaatgtatttgttctgggatttattccggctaaa
gcagattctgttgttgtacttctttgtcgccagccatgtgctgcgcaaagctccctgaag
gatatgaactgggatcaagagcaatggaagcctttaatttcggatcgtgcttttttgtcg
tggcttgttaaagtaccttcagaggcagagcaaatgagagccagacaggtgacaccacag
cagattggccgcctggaagagctttggcgtgataacgtggatgccacctttcaggacttg
gagaagcctggtgtggatgaggagcctcaccaagttcttttgagatacgaagatgggtac
cagtatcaaaacatatttggtccactcgtgaaattggaagcagattatgacaagaggctc
aaagagtctcaaactcaggaagggatcgaagtgcgctgggacgtgggcctcaataagaag
acaattgcctacttcactctggccaagactgacagtgacatgaagctgatgcatggagat
gagttgaggctcagatatgtcggtgaactgcacaaagcatggtcaggggtcggtcacgtg
atcaaggtgcctgacaactatggagacgatgttggtctggagctgaagagtggggtcgga
gcacctttggactgtacgtccaactttgttgtggacttcatatggaagagcacatctttt
gacagaatgcaattggctctgcgtaaattcgcagtggacgactcgtcggtgtcgggctac
atctaccgccgcctgctgggccacgaggtggaggaggtgctgttccgggtgcacctgccc
aagcacttcagcgcgcccaacctgcccgacttgaacagatcgcaggtatatgcagtgaaa
catgctctgcagcgtccattgtccttgatccaaggccccccaggcacgggcaaaactgtc
acatccgccaccattgtgtaccaactagtgcgtcagaacggcgggccggtgttggtgtgc
gcgccgtccaacactgccgttgaccagctgacggagaaaatacataaaaccgggttaaag
gtggtccgattgtgtgccaagtcgcgcgaagctatggagtcttctgtgtcatttctggca
ctgcatgaacaagcgcgtgctttaggttccgctgatagtgaactgagaaagcttaccaga
ttgaaggaggaggctggagagttatctgctgcggatgagagacgataccgggctcttcgg
cgggccgctgagagacgtttgttggatgctgccgatgtggtgtgtaccacgtgtgtgggc
gctggggatccacgcgtcgctcgtatgcgcttccaatccatcctcatcgacgaaggcatg
caatccactgaaccagagtgcatggtgccagtcgtgctcggcgcacgacaactgatcctc
gtcggcgaccactgccagctcggccctgtcgtcatgtgcaagaaggccgccaaagccggc
ctcagccagagtttgttcgaacgcctcgtcgtcctcggaatccgccccttcaggctcgag
gtccagtaccgcatgcatcccgagctgtcgcgttttccgtcggacttcttctacgaagga
tcacttcaaaacggagtgagcgctgaagagcggcggctgcacaagatcgacttcccgtgg
ccgcgccccgaccggcccatgttcttctacgtcacccagggacaggaggagatcgcgggc
tccgggacttcttacttgaatcgcacggaagcggccaacgtcgagaagctcaccacccgc
ttcctgaaggccggcgtccgacctgaacagatcggcatcatcactccgtacgagggccag
cgctcgtatttggtgcagcacatgcagtaccagggctccctgcacgccaaactgtaccag
gagatcgaggtcgccagcgtcgacgccttccagggccgggagaaggacatcatcatcatg
tcctgcgtccgctccaacgagcaccagggcatcggcttcctgagcgacccgcggaggctc
aacgtggcgctcacgcgcgccaagtacgggctgatcgtcgtcggcaaccccaaggtgctg
agcaagcagccgctgtggaaccacctgctcgcgttctacaaggagcggcgcgtgctcacc
gagggcccgctgtccaacctgaaggagtccgcgatccagttcgcgaagcccaagaagctg
gtgaacgcgcaaaaccccggctcgcacttcatgtcgacgtccatgttcgacgcgcgcgag
gccatggtgcccggctcggtgtacgaccgcgcgcggccgccgcgcgacccgctggcctac
gtggggccggagagcgcgccgcacgcgcccgtgccgcacgccgccttcgccgcgcaccgc
gggccgcgcgcgcccgccgccgggccagcgcgcgcgcgccgccgcccgccgcgcctgtcg
caggagccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcgtcgcagcccgac
ttcagccaggagtcggcggcgcccgactgcccgtcgcagccggacgggctgctgtcgcag
gactccacgtaccagggcggcttccgcgcgcgctgcggccagtactga
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