Bacillus amyloliquefaciens DSM 7: BAMF_0055
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Entry
BAMF_0055 CDS
T01321
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bao
Bacillus amyloliquefaciens DSM 7
Pathway
bao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAMF_0055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bao03400
]
BAMF_0055 (mfd)
Enzymes [BR:
bao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAMF_0055 (mfd)
DNA repair and recombination proteins [BR:
bao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAMF_0055 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
AAA_14
Motif
Other DBs
NCBI-ProteinID:
CBI41181
UniProt:
A0A9P1NFB0
LinkDB
All DBs
Position
61502..65035
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAAVRRMLPPKELWKSSQIVISLGDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKTVAIGPAKELIIRAEEKARAM
DRLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPSDTLLVLDEVSRIHEMEDQLQKEEAEFTTSLLEEGKILHDINLSFSFQELMGQKRRPA
IYFSLFLRHVQHTSPQNIVNVTSRQMQNFHGQMNVLTGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFEAAFPYQETDDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTPKIEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSITTIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAVRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQGVKKETIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaatattcaaacctttattaaagaaagcgatgattttaaatccattgttaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctccgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacagaagatctgacggcgcttctcggggatcaatctgttttt
ctataccccgtaaatgaattgatttcttcagaaattgctgtagccagtcctgaactgcgg
gctcagcggctcgatgtcattaatagattaacaaacggagaagccccggtcgttgtggcg
cccgttgcggcagttagaagaatgcttccgccgaaggagctgtggaaaagcagccaaatc
gtcatttcgcttggagacgatatagaaccggatcagctgtctgcccgccttgttgaggta
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacatcagagcatccggtgcgaattgagctgtttgatacggag
gtcgactccatcagaagctttaactctgatgaccagagatcaattgagacgctcaaaacg
gtggcgatcggaccggcgaaggaactgatcatccgggcggaagaaaaagcccgcgcgatg
gataggctcgataaagggcttgccgacagtctgaaaaagctgaagcaggacaaacaaaaa
gaaatgcttcatatcaacatctcacatgataaagaacgattatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaaacctgctagtttgctagattat
accccgtcagacaccttgttagtgttagacgaggtcagccgcattcatgaaatggaggat
cagctccaaaaagaagaggccgaatttacgacaagtctgctggaggaagggaaaattctg
catgacattaacttatccttcagctttcaggagcttatgggccaaaagcggcgtccggca
atttatttctcattatttttgcgtcatgttcagcatacaagccctcaaaacatcgtgaat
gtgacaagccggcagatgcagaattttcacggacagatgaatgtgcttaccggtgaaatg
gagcgctttaaaaaatcaaacttcaccgttgtctttttaggggcaaataaggacagaacc
gacagattggcatccgtgctggctgattacgaaattgaagccgcaaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgaactgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacagaggaagagctgttcaaaaaccgaatcaag
aagaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caagtcggtgactatgtcgtccacgtcaatcacgggatcggtaagtatttggggatcgaa
acacttgaaatcaagggcattcataaagattacctcaatattcactatcagggcagcgat
aagctgtacgtcccggtagagcaaatcgaccaggtgcagaagtacgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggttaagaaaaaagtc
gaaaattccgttcaggacatcgccgatgatctgattaagctttatgcggaacgcgaagca
agcaaaggctatgctttctcgcctgatcatgaaatgcagcggcagttcgaggctgctttc
ccttatcaggaaacagacgaccagctccgttccattcaggaaattaaaaaggatatggaa
agagagcgcccgatggaccgcttgctttgcggggacgtcggttacggtaagacagaggta
gccatccgtgcggcctttaaagcgatcgccgacgggaagcaggtcgcgctgcttgtgccg
acgacgatactcgcacagcagcattacgaaaccattatggaacgtttccaagactacccg
attaacatcggtcttctcagccggttcagaacgagaaaagaatccaatgagaccatcaaa
ggcctgaaaaacggaacggtagatatcgtgatcggaacccacaggcttttatctaaagat
gtcgtctataaagatctcggcttgctcataatcgacgaagagcagcggttcggcgtcaca
cataaggaaaaaatcaaacagatcaaagccaatgttgatgtgctgactctgacggcgact
ccgattcctcgtacccttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgttttcctgtccagacgtatgtcgtggaatacaacggggcgctt
gtaagagaagccatcgaaagagaactggcgcgcggagggcaagtatatttcttatacaac
cgcgtggatgacattgagcggaaggctgacgaaatttccatgctcgttcctgatgcgaag
gtggcgtacgcccacgggaaaatgaccgaaaatgaattggaaagcgtcatgcttaatttt
ctggaaggggaatcagacgtccttgtcagcacgaccattattgagacaggcgtagacata
ccaaacgtcaataccttaatcgtgtttgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggttggccgttccaaccgcgtcgcttacgcctattttacgtatcgc
agagacaaagtgcttactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagcttggttcaggctttaaaattgccatgcgtgacttgacgatcaggggagcggggaat
ctcctcggcgcccagcagcacggtttcatcgactcagtcggttttgacctgtactcgcag
atgctcaaggaagcgattgaagagcgaaaaggcgatacaccaaaaatcgaacagtttgag
acggaaatcgacatcgagcttgacgcatatatccctgaaaactatatacaagacggcaag
caaaaaatcgatatgtataaacgcttcagatcaatcactacaattgaggagaaaaacgag
cttcaagatgaaatcatcgacaggttcggcagttacccgaaagaagttgaatggctgttt
acagttgcagagatgaaggtgtacggaaaatatgaacgcgtcgaactcatcaagcaggat
aaggacgcagtcagatttaccatttcggaagaggccagtgcacagattgacggacagaaa
ttgttcgaactcggcaataaatacggccggcaaatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgtactc
ggcatgctgaaaggccttcagggcgtgaagaaagaaacaatcgcgtcttcataa
DBGET
integrated database retrieval system
