Bacillus amyloliquefaciens DSM 7: BAMF_0435
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Entry
BAMF_0435 CDS
T01321
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase ydbR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bao
Bacillus amyloliquefaciens DSM 7
Pathway
bao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAMF_0435 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bao03019
]
BAMF_0435 (cshA)
03009 Ribosome biogenesis [BR:
bao03009
]
BAMF_0435 (cshA)
Enzymes [BR:
bao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BAMF_0435 (cshA)
Messenger RNA biogenesis [BR:
bao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAMF_0435 (cshA)
Ribosome biogenesis [BR:
bao03009
]
Prokaryotic type
rRNA helicases
BAMF_0435 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
CBI41561
UniProt:
A0A9P1JF60
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All DBs
Position
473119..474654
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AA seq
511 aa
AA seq
DB search
MVNHDITETAIRRSLNNLTITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDV
IGQAQTGTGKTAAFGIPLVEKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVL
PIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFI
DDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV
QERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVA
LRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMT
FITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAA
AELLEDHDAVTVVAAAIKMATKEPDSTPVRLTDEAPMVSKRYKNQRTSKRRDGQGGGYRG
GKGKSSNRSSYDKKRSNDRRSSGDRRQKKSY
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaatcacgacattactgaaacagcaatcagaaggagtttgaataatttgactata
acgtttcaagatttccaattaagttctgatctcatgaaatcaatcaatcgtatgggattt
gaagaagcaacaccgattcaggcacaaacgattccgctcggacttttaaataaagatgtc
atcggacaagcgcaaacaggtacaggtaaaacagctgcgttcggtataccccttgttgaa
aaaatgaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacccgtgaatta
gccattcaagtatctgaagagttatataaaatcggacaagataagcgtgcgaaagtgctg
cctatttacggcggtcaggatatcggacgtcaaatccgcgcattgaagaaaaacccgcat
atcatcgtaggtacgccgggacgtcttcttgaccatatcaaccgccgcacgatccgttta
aacaacgtgaacacggttgtcatggatgaggcagatgaaatgctgaacatgggattcatt
gatgatatcgaatctattctctcaaacgtgccgagcgagcaccaaacgctcttattctca
gcaacaatgcctgcgccgatcaaacggatcgcagagcgtttcatgactgagccggagcac
gtaaaagtaaaagcgaaagaaatgactgtatcaaacatccagcagttctacttggaagtg
caagaacgcaaaaaattcgacacgctgactcgtcttcttgacattcagtctccggaactt
gcgatcgtattcggccgtacaaaacgccgtgttgacgaattagcggaagctctgaacctt
cgcggatatgcggctgaaggaattcacggtgacttaacgcaggcgaagcgtatggtagcg
ctccgcaagtttaaagaaggtgcgatcgaagtgcttgtagcgactgacgttgctgcccgc
ggacttgatatctcaggcgttacccacgtgtacaactttgacgtgcctcaagatcctgaa
agctacgttcaccgtatcggaagaacgggccgcgcaggaaaaacgggtatggcgatgacg
tttatcacaccgcgtgagaaaagcatgcttcgcgcgattgaacagacgacaaaacgcaaa
atggaccgcatgaaagagccgacgcttgacgaagcattagaaggacagcagcaggtgacg
gttgaccgtctgcgcacgacgatcagcgaaaacaacctgaacttctacatgacggcagct
gcggaactgttagaagatcatgatgcagtgacagttgtggctgcagccattaaaatggcg
actaaagagccggacagcacgcctgtacgcctcactgatgaagcgccgatggtcagcaaa
cgctataaaaaccagcgtacttctaagcgcagagacggccaaggcggcggctaccgcggc
ggtaaagggaaaagcagcaaccgttcttcctacgataaaaaacgttcaaacgaccgccgt
tcttcaggtgacagacgccagaaaaaatcatactaa
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