Bacillus amyloliquefaciens DSM 7: BAMF_2558
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Entry
BAMF_2558 CDS
T01321
Symbol
yrrC
Name
(GenBank) putative exonuclease with DNA/RNA helicase motif
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bao
Bacillus amyloliquefaciens DSM 7
Pathway
bao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BAMF_2558 (yrrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bao03400
]
BAMF_2558 (yrrC)
Enzymes [BR:
bao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BAMF_2558 (yrrC)
DNA repair and recombination proteins [BR:
bao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BAMF_2558 (yrrC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
HHH_5
AAA_22
T2SSE
AAA_12
UvrD_C
AAA_16
nSTAND3
DEAD
NPHP3_N
AAA
NTPase_1
AAA_28
Rad17
AAA_17
TsaE
Zeta_toxin
ABC_tran
AAA_18
AAA_29
Motif
Other DBs
NCBI-ProteinID:
CBI43684
UniProt:
A0A9P1JIN2
LinkDB
All DBs
Position
complement(2601216..2603594)
Genome browser
AA seq
792 aa
AA seq
DB search
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDE
TYTFYGKTATHPKFGLQFQAEHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGD
GALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQIMISLNQYGFGPQLSMKIYQA
YETETLEKIQENPYQLVKDVEGIGFVKADELGEKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYA
EQNVAKRVLDIAAQTEYADQFPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLL
TGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPVLLAAPTGRAAKRMSESTGLP
AVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTK
DRSFIRCNSAQIKEVVDQVVSNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPP
KEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIVSIFYAKENTEKEDMVVVSFD
GNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGME
GITPFDFMEEKA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagctgaaaatcgaggaacaaccgtatgtaaaaggcgttattcatacggtcatt
taccacaatgacaccaacctgtatacagtgctgaaggtcaaggttgcagaaacgtctgag
gcgatcgaagacaaggtcgtatccgtaacgggctacttccctctgctgcaagaagatgag
acttacacattttacggaaaaaccgccacacaccccaagttcggcctgcaattccaggct
gaacactttaaaaaagaaattccgaccacaaaagaagggattattcactatttatcaagc
gatctgtttgaaggaatcggaaaaaaaacggcggaagaaatcgtcaaaaagcttggagac
ggcgcgctgaataaaattctggctgatgcgtcggtgctttacgatgtgccgaaaatgtcc
aaaaagaaagcggataagcttgccggagagctgcagcggcatcaggggctggagcagatt
atgatttctcttaaccaatatggtttcggacctcagctttccatgaaaatttatcaggct
tacgaaacggaaacccttgagaaaattcaggagaatccttatcagcttgtaaaggacgtg
gaaggcatcggctttgtaaaagccgacgagctgggcgaaaaaatgggtctgtcagggaac
catcccgagcggatcaaagcggcgatcttatatacgattgaatcgacctgcctttcagaa
ggtcatacgtacatagacacaaagcagctgattatcaatacgcaaacgcttctgaatcag
tcagctgacggaggccgggtcacggaaatggatgcggctgacggcatcatcgccctcgga
gagagtaaggacatcgtcatagaaggagaccgctgctattttccgtctttgttttacgcg
gaacaaaatgtcgcaaaacgcgtgctcgacattgcggctcagacggagtatgccgatcaa
tttcctgaatcggaatttctgcttgcgctcggcgaactggaagaacggatgaaagttcaa
tacgctccgagtcaaaaggatgccattcaaaaagcgctgtcttcgccgatgcttttactg
accggaggaccgggtacgggaaaaacgaccgttatcaaaggaatcgtggaattatacagt
gaactccacggcgtatcgcttgatcccggtgattataaaaaagacgaggcgtttccggtg
ctgcttgccgcgccgaccggaagagccgcaaaacggatgagcgaatctacgggtctgcct
gctgttacgattcacaggctgctcggctggaatggcgctgaaggctttacctacaatgaa
gatcagccgattgaagggaaactgatcattatagacgaagcgagtatgctcgatatttgg
ctcgccagccatttgtttaaggcgctccctaagcacatccagctcatcgtcgtgggtgat
gaagaccagcttccttccgtggggccggggcaggtgctgagagaccttttggcttctgag
gtgctgccgaccgtgcgtctgacagatatttaccgtcaggcggaagggtcatccatcgtc
gaacttgcccatgatatgaaaaaagggctgcttccaaaaggactgaccgcgccgacaaaa
gaccgctcatttatccgctgtaattctgcacagattaaagaagtcgtcgatcaagtcgtt
tcaaacgcgttaaagaagggatatacctccagagatattcaagtgcttgcgccgatgtac
aggggaaaagcgggaattaacgagctgaatatgcttcttcaagacatcatgaatccgccg
aaagaaaaaaggcgggagctgaaattcggagatgtcgtctacaggacgggcgataaaata
ttgcagcttgtcaaccagccggaaaacaatgtgtttaacggtgatatcggcgaaatcgtg
tccattttttatgccaaagaaaatacggaaaaagaagacatggtcgtcgtctcgtttgac
ggcaatgaaatcacctttacgaaaaaggatttcagccagtttacccatgcttactgctgt
tccatccacaagtctcagggaagtgaatttccgattgtcgtcctgcctgttgtcaaaggc
tactatcgaatgcttaggagaaatctcctttataccgccattacaagggccaagaaattt
ctgatcctttgcggagaagaagaagcgcttgaatggggcgtcaaaaacaatgatgccacc
gtcagacagacgtcgcttaaaaacaggctcacagagcagactgaagagatggatgcagaa
ctggccgctctgcaaaaagaactgccgttcagtgtatatgatgcgaatatcggaatggaa
ggcattacgccgtttgactttatggaagaaaaagcgtaa
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