Bacillus amyloliquefaciens DSM 7: BAMF_3216
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Entry
BAMF_3216 CDS
T01321
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bao
Bacillus amyloliquefaciens DSM 7
Pathway
bao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAMF_3216 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bao03019
]
BAMF_3216 (rnr)
03016 Transfer RNA biogenesis [BR:
bao03016
]
BAMF_3216 (rnr)
Enzymes [BR:
bao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BAMF_3216 (rnr)
Messenger RNA biogenesis [BR:
bao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAMF_3216 (rnr)
Transfer RNA biogenesis [BR:
bao03016
]
Prokaryotic type
tRNA degradation factors
BAMF_3216 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
CBI44342
UniProt:
A0A9P1JJS9
LinkDB
All DBs
Position
complement(3272177..3274510)
Genome browser
AA seq
777 aa
AA seq
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MEKEAFMDRLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMNRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSYTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctctcgttcatgaaggaagaggcgtacaag
ccccttaccgttcaggaacttgaggagatgctgaacatcacggaagccgaagaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggtcagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgcc
aagggcttcgcgtttctgctgccggaagatacctcattaagcgacgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggtgcggctcaactcccagtca
agcggatcgagacaggaaggcactgtcatccgaattctggaaagaagcatagaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggctttgtcattccggatgataaaaaaatc
acgagcgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtgaaactgacaagctatcctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgacccgggcattgatattttatcaatcatccataagcacggc
ctgccgggagactttccggccgaagcgatggagcaggcaacaagtacgcccgacaccatc
gatgaaaaagacataaaagaccgccgtgatctccgtgatcaggtcattgtcaccattgac
ggcgcggatgcgaaggatctcgatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgacgtcagccattacgtcacggagaattccccgatt
gataaagaagcgctggaaagagggacaagcgtgtacttggtagaccgggtcatcccgatg
atcccgcacaggctgtctaacggaatctgttctttaaatccgaaggtcgaccgcctgacg
ctttcctgcgaaatgacaatcaaccagcagggacaggtgacggagcacgagatcttccaa
agcgtcatcaaaacgacggaaagaatgacctattcagatgtcaaccgaatcctcacagaa
gacgacgctgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgcctggcggaaattctccgggcgaaacggatgaaccgcggcgccgtggattttgatttt
aaagaagcgaaggtgctcgtcgatgaggaaggcgccgtaaaggacgtcgtcatcagagaa
cgctcagtagccgaaaagctgattgaggaattcatgcttgtcgcaaacgaaacggtggcc
gaacacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgct
gaaaaactgcaaaagttcctggagttcgtcacgacattcggttatatcgtcaaagggaca
gccggagacattcatccgcgcgcattgcaaagcattcttgacgaagtccgggaccgtccg
gaagaaacagtgatctcaacagtcatgctccgttccatgaagcaggcgaaatacgacccg
caaagcttgggccatttcgggctggcgactgaattttatacacacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacagactgatcagaacgtatttgatcaacggacaa
tcggacgaagcaactcaagaaaaatgggccgaacgcctcccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgacgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggagtttgacggcatgatcagttccgtcacgaat
ttcggaatgttcgtcgagctgccgaatacgattgaagggcttgtgcacgtcagctttatg
acggatgattattaccgttttgatgaacagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggggatgaaatcacggtcaaggtcgtggacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacaaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgtgtattaaacagctataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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