Bartonella apihabitans: BBC0178_009640
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Entry
BBC0178_009640 CDS
T08729
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBC0178_009640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapa03021
]
BBC0178_009640
03400 DNA repair and recombination proteins [BR:
bapa03400
]
BBC0178_009640
Enzymes [BR:
bapa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBC0178_009640
Transcription machinery [BR:
bapa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBC0178_009640
DNA repair and recombination proteins [BR:
bapa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBC0178_009640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AQT42449
UniProt:
A0A1U9MAE7
LinkDB
All DBs
Position
1070532..1074740
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQAPTQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKMHQLLSEEEYMMAVDEFGPDQFTA
LIGAEAIYELLAAMDLQKIAADLRTELAETTSDLKIKKLMKRLKIVENFIESGNRPEWMI
MKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILEEVIRE
HPILLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVCEHEPGEGMAFGDMGELQHALE
SKVVTLHTKIKGRVKSIDAEGNVVSKIYDTTPGRLIIGETLPKSPNIKFDIVNQEMTKKN
ISKMIDHVYRHCGQKETVMFCDRIMSLGFANACRAGISFGKDDMVIPESKARLVQETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISEVDCGTDKGLTMQAIVDAGQVVASLGQRILGRT
ALHDIIHPTTGEVIVEGGRMIEEADVAKIEAAGIQSVQIRSALTCETRIGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDTSYLEASYEGKVELRHRK
VVRNSEGHLVVMGRNMAILIKDENGKERASHRITYGARIFVDDGDVVKRGQRIAEWDPYT
RPIMTEVEGYIGFEDMVDGLSVTETTDEATGITKRQVIDWRANPRGADLKPAIVIYSDKK
GSKIAKLSKGGDARYMMSVETILSVEPGAHVMAGDVIGRLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEIDGTIRFGRDYKNKRRITIEPNDDTVEPVEYLIPKGKPFHLQDGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQSVYRLQGVVINDKHIEVIVRQMLQK
VEITDSGDSGYIPGDHVDRIELQEVNDRLIEEGKKPASGNPVLLGITKASLQTPSFISAA
SFQETTRVLTEAAVAGKMDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATARDDLIVDEH
RKANGGDKANAMLSDMTHTAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggcgcctacacagacgtttgattcc
atcaggatatcaatcgccagccctgagaagattctgtcctggtcttacggcgaaatcaaa
aagcccgagaccattaactaccgtacgttcaagccagaacgtgacgggcttttctgcgcg
cgtattttcgggccgatcaaggactatgaatgtctgtgcggcaaatacaagcgcatgaaa
tataaaggcattatctgcgaaaaatgcggcgttgaagtaactctttcacgtgttcgccgt
gaacgtatggggcatatcgaacttgctgctccagtcgcacatatatggtttttgaaatca
cttccgagccgcatcggtacgcttcttgatatgaccctcaaggatatcgagcgcgttctt
tattttgaaaactacattgtaaccgaaccgggcttgacctcgctcaagatgcatcagctt
ctttccgaagaagaatatatgatggcagttgacgaattcggccccgaccagtttacagct
ttgatcggtgcagaagctatctacgagctcttggctgcaatggatttgcagaaaattgct
gcagatttgcgcaccgaattggcagaaacgacatcggacctgaaaatcaagaaattgatg
aagcgtctgaagatcgttgaaaacttcattgaatcgggaaatcgtccggaatggatgatt
atgaaagtcattccggttattccgccggatttgcgcccgttagttccgttggatggtggc
cgttttgcgacgtccgacctgaatgacctctatcgtcgtgtcatcaaccgtaacaatcgt
ttgaaacgtctgatcgagcttcgcgctcccggcattattgtacgtaacgaaaaacgtatg
ttgcaggaagctgttgacgctctgttcgataatggtcgtcgtggtcgtgtcatcaccggt
gccaataagcgtccgttgaaatcgctgtcggatatgctgaaaggcaagcagggacgtttc
cgtcaaaacctgctcggcaagcgtgtcgactattccggtcgttctgttattgtgaccgga
ccggaactgaagttgcatcaatgcggcttgccgaagaaaatggctttggaactattcaag
ccgttcatttacgcacgccttgatgcaaagggttattcatcaaccgtaaaacaagccaag
aagctcgttgaaaaagaacgccctgaagtttgggatattctcgaagaagttatccgtgaa
cacccaattcttttgaaccgcgctccgacgttgcaccgtttgggaattcaggcctttgaa
ccgactttgatcgaaggtaaggcaatccagcttcatccgctggtgtgtacagctttcaac
gccgatttcgatggcgaccaaatggctgtccacgtaccgctgtcgctcgaagcccagctc
gaagcccgcgtcttgatgatgtcgacaaacaatattctgcaccctgccaacggcgcgccg
attattgttccttcgcaagacatggtgcttggcctttattacctgtcaattgtttgcgaa
catgagccgggtgaggggatggcttttggtgatatgggtgaattgcagcacgctttggag
agtaaagttgtgacgcttcacaccaagatcaaagggcgtgtcaagagtattgatgcagag
ggtaatgttgtttcgaagatttacgataccacgccgggtcgtctgatcatcggtgaaaca
ctgcccaaaagcccgaacatcaagttcgacattgtcaatcaggaaatgaccaaaaagaac
atttccaagatgattgaccatgtttaccgtcactgcggacaaaaagaaacagtcatgttc
tgtgaccgcatcatgtctctgggctttgccaatgcttgccgtgccggcatttcgttcggc
aaggacgatatggttataccggaaagcaaggcaagactggttcaggaaaccgaggctttg
gccaaggaatatgaacagcaatataatgacggtcttattacacagggtgagaagtacaac
aaggttgtcgacgcttggggtaaatgtaccgatcgcgttgccgacgagatgatgaaacgc
attcaggcggttgaatttgatcccgaaactgggcgtcaaaaaccgatgaattcgatttac
atgatgtctcactccggtgcccgtgggtcgccgaaccagatgaagcagctgggtggtatg
cgtggcttgatggcaaagccttcgggcgaaatcatcgaaacaccgattatctccaacttc
aaggaaggcttgactgtgaacgagtacttcaactcgacacacggtgcccgtaagggactt
gccgatacagcattgaagacagctaactccggttacttgacccgtcgccttgtcgacgtt
gcgcaagatgctatcatttccgaggttgattgcggaacagacaaaggtctgacaatgcag
gctatcgttgatgccggtcaggttgttgcctccctcggccaacgtatccttggtcgtacc
gcacttcacgatattatccatccgacaacgggtgaagtcatcgttgaaggcggccgcatg
atcgaggaagcggatgttgccaagattgaagctgccggtatccagtctgtccagatccgt
tctgctctgacttgcgaaacccgcatcggtgtttgtgccaagtgctatggtcgtgatctc
gcacgtggtacgccggtcaatcagggtgaagcagtcggtgttattgcagcccagtctatc
ggggagccgggtacacagttgacaatgcgtacattccacttgggcggtaccgcacaggtt
gttgatacctcttatctggaagcatcctatgaaggtaaggttgaattgcgccaccgcaag
gttgttcgcaattctgaaggccatctggtcgttatgggccgtaatatggctatccttatc
aaggatgaaaacggtaaggaacgcgcttctcaccgcattacctatggtgctcgcatcttc
gttgacgatggcgatgtcgttaaacgtggtcagcgtattgccgaatgggatccgtatacc
cgtccgatcatgaccgaagttgaaggctatatcggcttcgaggatatggttgatggtcta
tctgttacagaaacgaccgatgaagcaaccggtatcaccaaacgtcaggttattgactgg
cgtgccaatccgcgtggcgccgatcttaagcctgccattgttatctattccgataaaaaa
ggcagcaagatcgccaagctttcgaagggtggtgatgcccgttatatgatgtcggttgaa
accattctctcggttgaaccgggtgctcatgtaatggctggtgatgttattggtcgttta
ccaatggaaagcgccaagaccaaggatattaccggtggtcttccacgcgttgccgaactc
tttgaagcacgtcgtccgaaggatcatgctattattgctgaaattgatggcacaatccgc
tttggacgcgactataagaacaaacggcgcatcacaatcgagccgaatgatgatacggtc
gagcctgttgaatatctcattccgaagggcaagcctttccatctgcaggatggtgaccag
attgaaaagggtgattatatcctcgacggcaatccggcaccacatgatattctggccatc
aagggtgtggaagctttggcttcctatctcgtcaacgaaatacaatctgtctatcgtctc
caaggtgttgtgatcaacgataagcatattgaagttatcgttcgccagatgctgcaaaaa
gtcgaaattaccgattccggtgattccggctatattccgggtgaccatgttgaccggatc
gagctacaggaagttaatgatcggctcatcgaagaaggtaagaaaccggcaagcggcaat
cctgttctactgggtattaccaaagcttcactgcagacaccgtcatttatttctgcagca
tccttccaagaaacaacgcgtgtgcttactgaagcagccgttgccggaaagatggatact
ttgcagggcttgaaggaaaacgttatcgttggtcgtcttatccctgccggtaccggtggc
acaattgcccagatccgtcgcattgcaacagctcgtgacgatctgatcgttgatgaacat
cgcaaagccaatggtggcgataaagccaatgctatgttgtctgatatgacacatacagcg
gctgaataa
DBGET
integrated database retrieval system
