Bartonella apihabitans: BBC0178_010990
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Entry
BBC0178_010990 CDS
T08729
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBC0178_010990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapa03019
]
BBC0178_010990
03009 Ribosome biogenesis [BR:
bapa03009
]
BBC0178_010990
Enzymes [BR:
bapa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBC0178_010990
Messenger RNA biogenesis [BR:
bapa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBC0178_010990
Ribosome biogenesis [BR:
bapa03009
]
Prokaryotic type
rRNA processing factors
BBC0178_010990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AQT42579
UniProt:
A0A1U9MAT6
LinkDB
All DBs
Position
complement(1221177..1223918)
Genome browser
AA seq
913 aa
AA seq
DB search
MSNKMLIDASHPEETRVVVVRGNRIEEFDFESEHKKLIKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLEEEEKAARVDDEDEQENEKPSRANNRKKSR
SSEASNESETVSVSSEENDDTEQTADDTEDSVELVGAEDALEEVPTRERTPRRQYKIQEV
IKRRQILLVQVVKEERGNKGAAMTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLK
EVVKDLHVPKGMGVILRTAGANRTKTEIKRDYEYLMRLWENVRALTLESVAPCLVYEEGS
LIKRSIRDLYNKDISEILVSGEQGYREAKDFMRMLMPSHAKAVQPYREQLPIFAHNGIEA
QLDGMLQPEVTLKSGGYLVINQTEALVAIDVNSGRSTKEHSIEETACQTNLEAAEEVARQ
LRLRDLAGLVVIDFIDMEEKRNNRLVEKKLKDCLKDDRARIQVGRISHFGLMEMSRQRIR
ASVLESTMQPCPHCNGTGYIRSDSSLALHVIRSIEEYLLRNPHFNIIVRTSVATALYVLN
HKRQALSDLENRFGLTINIEADDEVGAQNLAIYKGTPAEGTPAVVPQLPADDEADDDNEV
EETAIEVESEEKDSDNTDNNQRRKRRNRGKSNDRNEGKNQRVRNEDDVVRSDEDNKRRRR
RGRRGGRRYRDGDFERRRIPYAEPVGDFAEKALAEVIAARRQRRVPHAEPVGFSATEVAV
QVTPVAVKEPQELKASSETEVSKEEQKTEQKKPTKTRRRRTQKTSAEEEKVVSETNVEAI
VESEEDKKPASRGRKRKTKTKETTSETISDETANAVTSKETELAQETEKPAKKTARRSRK
AKAEAQSNETAIDDVKVQTEKPARKSSRKTARAKTTTAENNETVTTEPVVTSSDENEDKK
PKRVGWWQRKGFF
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaatgcttatcgatgcctcccacccggaggaaactcgcgtagttgttgtt
cgtggtaacaggattgaagaattcgattttgaatccgaacacaaaaaactgataaaagga
aatatctatctggctcgcgtaacgcgggttgaaccttctctgcaagctgcattcgttgaa
tatggcggtaatcgccacggatttcttgcgttttctgaaattcatcctgactattatcaa
attcctgttgccgaccgacaagcgcttcttgaagaagaagaaaaggcagcccgtgttgac
gatgaggatgaacaggaaaacgaaaagccttcaagagcgaataacaggaaaaaaagtcgt
tcgtccgaagcaagcaatgaaagcgagacagtttctgtttccagtgaggaaaacgacgat
accgaacaaacagcagacgacacagaagatagtgtagaacttgtcggagcagaagacgct
ttggaagaggtgccaacccgcgagcgcaccccgcgtcgacaatataaaattcaggaagtt
atcaaacgccgccaaattctgttggtccaggttgtaaaagaagaacgtggcaacaagggc
gctgccatgaccacctatctttctttagcaggacgatattctgttttgatgccgaatacc
gcacgtggcggtggcatttcccgcaaaatcaccaatgtgcaggatcgtaaacgtctcaag
gaggttgttaaggatcttcacgtgccgaagggaatgggggtcattttacggacagccggc
gccaataggacaaagaccgaaatcaaacgcgattacgaatatctgatgcgcctatgggaa
aatgtacgtgcattgacacttgaatctgttgctccttgtcttgtctatgaagaaggtagc
cttatcaaacggtcgatccgtgacctttataacaaagacatcagtgagatacttgtttcg
ggcgaacaaggctatcgtgaagcaaaagatttcatgcgcatgttaatgccgagccatgca
aaagctgttcaaccatatcgtgaacagcttccaatttttgcacataacggaattgaagca
cagcttgatggtatgctgcaaccggaagtaacgctaaaatccggcggatatctggttatc
aatcaaaccgaagctctcgtcgcaattgacgtaaattcgggtcgttccacgaaagaacat
tctatcgaggaaacggcttgccaaacaaatctcgaagctgccgaagaagttgccagacag
ttgcgactgcgcgacctcgcaggactcgttgttattgatttcattgatatggaagaaaaa
cgcaataatcgtcttgtcgagaaaaaactcaaagattgcctgaaagatgaccgggcccgc
attcaagtcgggcgcatttcgcattttggtcttatggaaatgagccgtcaacgtattcgg
gcatcggtgctggaaagcacgatgcagccctgcccacattgcaatggcaccggctatata
cgttctgattcgtccttggctctgcacgttatccgctcgattgaggaatatcttctgcgc
aatccgcactttaatattatcgtccgtacatcggtcgctactgccctttatgttcttaat
cataaaagacaagctctatccgatttggaaaaccgttttggtctgacgatcaatatcgaa
gcagatgacgaggttggtgctcagaatttggctatatataaaggtacacctgccgaagga
acgcctgccgtggtaccccagcttccagcagacgatgaagcggatgatgacaatgaggtc
gaagaaaccgcaatcgaggtcgagagcgaagaaaaagatagtgacaataccgataataac
caaaggcgcaaacgtcgcaatcgcggaaaatcgaacgatcgcaatgaaggaaaaaatcaa
cgcgtccggaatgaagatgatgttgtacgcagtgacgaagacaataaacgtcgtcgccgg
cgtgggcgtcgcggtggaaggcgctaccgtgacggcgacttcgaacgtcgtagaattcct
tatgcggaaccggtaggcgattttgctgaaaaagcgcttgcagaggttattgctgcaaga
cgccaacgccgagttcctcatgcagaaccggttggtttttcggcaacggaagttgcagtt
caggttacacccgttgctgtaaaagagccgcaggagctaaaagcttcttcggaaacggaa
gtttctaaggaagaacaaaagacagagcaaaaaaagccgacaaaaacgcgcaggagacgg
acgcaaaaaacctcagcagaagaagaaaaagtagtttccgaaacgaatgttgaagcaatt
gttgaaagtgaagaagataaaaaacctgcttctcgcggacgcaaacggaagacaaaaacg
aaagaaacaacaagtgaaacaatttcggatgaaactgcaaatgctgtgacgtcgaaagaa
accgagttagcacaagaaactgaaaaacctgctaaaaagactgctagacgttcacggaaa
gctaaagccgaagcacaatcaaatgagacagcgattgatgatgtgaaggtccaaacagaa
aaaccggcaagaaaatcttcgcgcaaaacggccagagcgaagacaactacagctgaaaac
aacgaaacggttacaacagaaccggtcgtaacgtcatcggatgaaaatgaagataaaaaa
ccgaaacgcgtcggctggtggcagagaaaaggttttttctga
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