Bartonella apihabitans: BBC0178_011590
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Entry
BBC0178_011590 CDS
T08729
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBC0178_011590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bapa03400
]
BBC0178_011590
Enzymes [BR:
bapa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBC0178_011590
DNA repair and recombination proteins [BR:
bapa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBC0178_011590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQT42636
UniProt:
A0A1U9MBG0
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All DBs
Position
1287075..1290578
Genome browser
AA seq
1167 aa
AA seq
DB search
MSIFKKNFATENLPQYLSFDGVVSGYEPFAIYKIAAEIGKKGPILYIARDGQKLDDLTHA
LSFVEPQMPVVQLPSWDCLPYDRVSPNPAISAKRMSALTNISALLRNPHPAIILTTANAI
MQKLPPRSMVEGQSITARPGQNLDMDKLVHHLEHNGFERVSSVREIGDFAVRGGIVDLFA
PGSDAPVRLDFFGDTLETVRAFDPASQRTTQTLKEFSLEPMSEITLTPELISKFRTNYIR
SFGAASPNDALYEAISEGRRFSGMEHWLPLFYDHLDTIFDYIGDIPVVFDHLAEEAMVER
NKLIEDYYEARLEQHDPKDSSTPYNPVKPAELYLTPEDIASLSEKVRHRIDLTPFNKPES
SGHLVLHSNVTIGRDFVEERTSENKNLFESVVDHVAELRSKGHKVLLTGWSEGSLERLLQ
VLDEHGLKGIEKVTSLHSVKVTPRDHITAAVVTVEHGFVADDLVVVAEQDILGDRLVRSA
RRRKRNADFISDMTTLNSGDIVVHVDHGIGRFVGLKTITAAGVPRDCLEIHYADEDRLFL
PVENIELLSRYGGEGTNVVLDKLGGVAWQARKAKLKKRLLEIAGQLIHIAAEREMRNAPV
LVPPTGSYDEFVARFPYDETDDQLRAIDAVLGDLAAGKPMDRLICGDVGFGKTEVAIRAA
FVAALNGYQVAVVVPTTLLARQHYKTFQARFQGLPVKIGQASRLVGAKELAAVKNGVREG
TVDIVIGTHALLGSTMQFSRLGLLVVDEEQNFGVKQKERLKELKTDIHVLTLSATPIPRT
LQLALTGVRELSLISTPPVDRMAVRTFVSPFDPLIVRETLMREHYRGGQSFYVCPRISDL
KDVQEFLANHVPELKVTAAHGQMPAGQLDDIMNAFYDGQYDVLLSTSIVESGLDIPSANT
LIVHRADMFGLAALYQLRGRVGRSKQRAYALFTLPNQKVLTPGADRRLKVLQSLDSLGAG
FQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKDGTAVSESQWSPQIS
VGTAVMIPDNYVPDLPLRLSLYRRLAEIEDLGDIDAFGAELIDRFGPLPVPVQHLLKVVY
IKALCRQANVEKLDAGPKGVVIQFRENNFANGVGLIKWIGEQGSMAKIRPDQSVVFIRDW
PNADQRLNGAATVMTQLVKLSKEGAKK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatatttaagaaaaacttcgctactgaaaatttaccacaatatctgagttttgat
ggcgtcgtctccggatacgaaccatttgcgatatataaaatagcggcggaaatcggcaaa
aaggggccaattctttatattgcgcgcgacgggcagaaacttgatgatctgacgcatgct
ttgagttttgtcgagccacagatgccggtggtgcaattgccttcatgggattgtcttccc
tatgaccgtgtttcgccaaatcctgcaatttcggcaaagaggatgtcggcgcttacaaat
atttctgctctgttaagaaaccctcatccggcaattatcctgactactgccaatgcaatt
atgcagaagctgcctccgcgttcaatggttgaaggccaatcgattaccgcgcggcccgga
caaaatctcgacatggacaaacttgttcatcacctcgagcataacggtttcgaacgggta
tcgagcgtgcgtgaaattggcgattttgctgtgagaggcggaattgtcgatttgtttgca
ccgggaagtgatgcaccagtaagactggatttttttggtgatacgcttgaaacagtacgt
gcgtttgatccggcaagccaaagaacaacacaaacgctcaaagaattctcgctggagccg
atgagcgagataactttaacgcccgaattgattagcaaattccgcacaaattatatcaga
tctttcggcgcagccagtccgaatgatgcgctttatgaagcaatttcggaaggccgaagg
ttttccggaatggaacattggctgccccttttttacgatcatcttgatacgatatttgat
tatattggtgatattccagtggtgtttgatcatcttgccgaagaggcaatggtcgagcgt
aataagcttatcgaagattattatgaggcccgcttggaacaacacgacccgaaagactct
tcgacaccatataatccggtaaaaccggcagagctctatctgacgcctgaagatattgct
tcattgtctgaaaaagtgcgacaccggattgaccttacgccgtttaacaaaccggaatcg
tcaggtcatctggtccttcatagcaatgttacgatcgggcgggattttgttgaagaacgc
acctccgaaaacaagaatttatttgaaagcgttgtcgatcatgttgcggaactccgctcg
aagggtcacaaggttctccttaccggctggagtgaaggatcgttggagcgcctgttacag
gtgcttgatgaacatggccttaaaggaatagaaaaggttacatctcttcattccgtaaaa
gtcactccccgcgatcatatcactgcagcggtggtaactgtcgaacacggatttgttgca
gacgatctggttgttgttgccgagcaggatatattaggcgaccggcttgtgcgctctgca
cgtcggcgcaaacgcaatgccgatttcatttcggatatgaccacattgaatagtggtgat
attgttgttcacgttgatcatggtattggtcgttttgtcggcttgaagacgattacagca
gccggagttccccgcgattgtctggaaattcactatgctgatgaagaccggctttttctt
cctgttgaaaatatcgaacttttgtcacgttatggcggtgagggaacaaatgttgttctt
gataaactaggcggcgttgcatggcaggcaagaaaagcaaaacttaaaaaacgtttgctc
gaaattgccggtcagcttattcacatcgcggccgagcgcgagatgcgcaatgcccctgtt
cttgtaccgccaaccggtagctatgacgaatttgttgcccgttttccctatgatgaaacg
gatgaccaattgcgtgctattgatgcggttcttggcgatcttgcagccggaaaaccgatg
gatcggctgatttgtggtgatgtcggattcggcaagacagaagttgcaatcagagccgca
tttgttgctgcattaaatggttatcaagttgccgttgtggtgccgacaacgctgttggcg
cgccaacactataaaacgttccaagcccgctttcagggattacctgtaaaaatcggacaa
gcatcgcggctagtgggagccaaagagcttgcagccgttaaaaatggtgtgcgtgaaggt
acagttgatattgttatcggaacgcacgcacttcttgggtcgactatgcagttttcacgg
cttggcttgttggttgtcgatgaggaacagaactttggcgttaaacagaaagaacgtctg
aaagaactgaagacagatattcatgtgctcaccctttcggcaactccgattccgcgtact
ctacaactggctttgaccggtgtcagagagttatcccttatttcaacgccacccgttgat
cgtatggcggtaagaacctttgtttcgccgtttgatccactgattgtgcgcgaaacgttg
atgcgtgaacattatcgcgggggccagagcttctatgtttgcccgcgaatttcggatttg
aaagatgttcaggaatttcttgccaaccacgttcccgaactgaaagttacagcagctcat
ggtcaaatgcctgcaggccagcttgatgatattatgaatgccttttatgacgggcaatat
gacgtgttactttcaaccagtatcgttgaatccggtcttgatattccttcggccaataca
ttgatcgtccatcgtgccgatatgttcggtcttgccgctctctatcaattacgtgggcgg
gtagggcgttcaaagcaaagagcctatgctttgttcacgcttcccaaccagaaagttttg
acaccgggtgccgatcggcggctgaaagtcttgcaatctcttgatagtcttggagccggt
ttccagcttgcaagtcacgacatggatataaggggtgccggcaaccttcttggtgaagaa
caatcagggcatatcaaagaagtcggtttcgaactttatcaacaaatgttggaagaagcg
gttgccgaattgaaagacggtacggctgtgagtgaaagccaatggtcaccgcagatctcg
gtagggacggcggttatgataccggataattatgttcccgaccttccattgcgcctttcg
ctttatcgccggctcgcagaaatcgaagatttgggtgatattgatgcttttggtgccgaa
ctgattgacaggttcggccccttgcctgttcctgtacagcacttgctcaaagtcgtttat
atcaaggctctatgtcggcaagccaatgttgaaaagttggatgccggtccgaaaggcgtt
gttatccagttcagagaaaacaactttgctaacggtgtcggactcatcaaatggattggc
gagcagggaagcatggccaaaatacgtcctgaccaaagcgtggtctttattcgtgattgg
ccgaatgccgatcagcgtttgaacggcgctgcaaccgtcatgacccaactcgtaaaactt
tcaaaagaaggcgcaaagaaatag
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