Bartonella apihabitans: BBC0178_013290
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Entry
BBC0178_013290 CDS
T08729
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bapa
Bartonella apihabitans
Pathway
bapa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBC0178_013290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapa03019
]
BBC0178_013290
03016 Transfer RNA biogenesis [BR:
bapa03016
]
BBC0178_013290
Enzymes [BR:
bapa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBC0178_013290
Messenger RNA biogenesis [BR:
bapa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBC0178_013290
Transfer RNA biogenesis [BR:
bapa03016
]
Prokaryotic type
tRNA degradation factors
BBC0178_013290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
TSP3_bac
Motif
Other DBs
NCBI-ProteinID:
AQT42795
UniProt:
A0A1U9MBW3
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All DBs
Position
1465842..1468100
Genome browser
AA seq
752 aa
AA seq
DB search
MKQHPDVNRKSSHLPTKDDILSFIRENPNLSGKRELAKAFNLKGDARIWLKDLLRELKAE
GVVAKQRNKLVPKHTLPPVTLIDIKGRDRDGGFIAFPSDWDGEDAPIVSLHPAKHMKGPA
IGVGDRVLAKIFRNKRKDGPAYTARAIKKIDKQELTTMGVLRDIGKGKWRLEPIDRKASE
IAVDLSPDSEAKSGDLVEVEIGRDKHYGLKRGKVTAILGSIDSEKALSMIAIISHDIPYV
FPERVLAEAEAAKPATMDNREDWRDLPLVTIDPEDAKDHDDAVYAEMDTSEDNKGGFIVV
VAIADVGYYVRPDSALDKEALKRGNSVYFPDRVVPMLPERISNNLCSLREGEDRPAIAVR
MIFDDQGKKRNHSFHRVMMRSAAKLSYVQTQKAIDGKPDEKTSPIVENVLKPLWAAYDAL
KKARDKRQPLELDLPEREIILDESGRIKDVVVPPRLDAHKLIEEFMIQANVSAAETLKSK
HQPLIYRIHDQPSLAKQEGLREFLHSLGLSLSRSAELTPERFNKILERVKDTDQQELVNQ
VVLRTQSQAEYAPENIGHFGLNLRNYAHFTSPIRRYADLTVHRALIRSLKFGNDGLTDEE
EKNLDEIAVAISLTERRAMAAERETIDRLVAHFLADKIGAEFTGRIAGVTKSGLFISLDR
LGADGFTPISTLATDYYIFDEARHALIGQKSHKGYQLGDSVHVGLVEAQPIAGALRFEML
SSPRPMAFSPVSHHKAKTGARRFNRSARKSRA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacatcccgacgttaaccggaaaagttcccatctccctacaaaggatgatatt
ctctctttcattcgggaaaacccgaatttgtcgggaaagcgggaacttgccaaagctttc
aacctcaagggcgatgcgcgaatttggctaaaagaccttctacgtgaactcaaagccgaa
ggcgttgttgccaaacagcgtaacaaattagttcccaaacacactctgccgcctgttacg
cttatcgatattaaaggtcgcgatcgcgacggcggttttattgcctttcccagcgattgg
gatggcgaagatgcgcccattgtctcgctccatccggcaaaacacatgaaaggacctgca
attggcgtaggggatagagttctagccaaaatttttcgtaacaaaagaaaagatggcccc
gcttataccgcgcgcgcaatcaaaaaaatcgataaacaggaactcacgacaatgggagtt
cttcgtgatattggcaaaggtaaatggcgtttggagccgattgaccggaaagcttccgaa
attgctgtcgatttgtcgccggatagtgaggcaaaatccggcgatctcgtggaggtcgaa
atcgggcgggacaagcattacggtttaaagcgcggaaaagtaacagcaattctcggcagt
attgatagcgaaaaagctttgtcaatgattgcgattatctcgcatgatatcccttatgtt
ttccctgaacgtgtacttgcagaggcagaagctgccaaacccgctacgatggataatcgt
gaagattggcgcgatcttccgctcgtcactattgatccggaagatgcaaaagatcacgat
gatgcggtttacgccgaaatggatactagcgaggacaataaaggtgggtttattgtcgta
gtagcgattgccgatgtcggttattacgtccggcccgatagtgcacttgataaagaagca
ctgaaacgcggcaattcggtttattttcccgatcgcgttgtgccaatgttgccggaacgc
atttccaacaatctatgttctctacgagaaggagaagaccgtccggctatcgcggtgcga
atgatttttgatgatcaggggaaaaaacgaaaccatagttttcaccgcgtcatgatgcgt
tctgccgcaaaactctcttatgtgcagacacaaaaagcgatagacggaaagccggatgaa
aagacgtctccgatagttgaaaatgttttaaagcctctttgggcagcctatgatgcatta
aaaaaggcgcgtgacaaacgacagccgctggaactcgatcttcctgaacgggaaattatt
cttgacgaaagcggccgcatcaaagatgtcgttgtcccgccgcggcttgatgcccataag
cttattgaagaatttatgattcaagccaatgtctcggccgccgaaactctcaaatctaag
caccagcctctgatttatcgtattcacgaccagccttcgcttgcaaaacaggaaggattg
cgcgaatttttgcattcgcttggtttatcgctctctcgaagcgccgaactgacacccgaa
cgcttcaacaaaatcctcgagcgtgtaaaagatacagaccagcaagagctcgtcaatcaa
gtggttttgcgtacacaatcccaggcggaatatgctcccgaaaacataggtcatttcggg
ctcaatttacgtaattatgcacattttacgtctcccattcgccgttatgcggacctgact
gtccaccgtgctctcattcgttcattgaagttcggcaatgatggtttaacggatgaagaa
gaaaaaaatcttgatgaaattgctgttgcaatttctctcaccgaacgccgtgcaatggcc
gcagaacgagaaacaatagatcgccttgttgctcactttcttgccgataagataggagct
gaatttacaggtcgtatcgccggtgtaacaaaatccggtttattcatatcgcttgaccgc
ctcggggccgacggcttcacgcccatttcaactctggcaacagactattatatttttgat
gaagccagacacgctttgatcggccaaaagagccataaaggctaccaattgggtgacagc
gtccatgtgggtcttgtcgaagcccagccaattgccggcgcgttacgcttcgagatgttg
agctctccaagacccatggcattttcgcccgtatctcatcataaagccaaaacaggtgca
cgccgttttaaccgttcagcacgaaaaagcagagcgtaa
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