Buchnera aphidicola F009 (Myzus persicae): BUMPF009_CDS00012
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Entry
BUMPF009_CDS00012 CDS
T03020
Symbol
rho
Name
(GenBank) Rho
KO
K03628
transcription termination factor Rho
Organism
bapf
Buchnera aphidicola F009 (Myzus persicae)
Pathway
bapf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUMPF009_CDS00012 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapf03021
]
BUMPF009_CDS00012 (rho)
03019 Messenger RNA biogenesis [BR:
bapf03019
]
BUMPF009_CDS00012 (rho)
Transcription machinery [BR:
bapf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BUMPF009_CDS00012 (rho)
Messenger RNA biogenesis [BR:
bapf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BUMPF009_CDS00012 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AHG61542
LinkDB
All DBs
Position
complement(628965..630224)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTALKNMPVSELITLGEKMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTILLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELPLSRKIAEKRVFPAIDY
NRSGTRKEELLTLPEELQKMWILRKIIHPMSEIDAMEFLLNKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgcacttaaaaatatgccagtttctgaattaattactcttggtgaaaaa
atggggttggaaaatttagcgcgtatgcgtaaacaagatattatttttgccatccttaaa
caacatgcaaaaagtggagaagatatatttggagacggagttttagaaatactacaagat
ggatttggttttttgcgttctgctgacagttcttatttagcaggtccagatgacatttat
gtttcacccagtcaaatccgtagatttaatttacgtacaggtgatactatttctggaaag
ataaggcctcctaaagaaggtgaaagatatttcgctttactcaaagtcaatgaagtcaat
tatgataagcctgaaaatgcaaggagtaaaatattatttgaaaatttaacaccattacat
gcaaattctagattacgaatggaacgaggaaacggttcaactgaagatttaacagcaaga
gtattagatttagcatctcctattggacgtgggcaacgtggtttaattgtagctcctcct
aaagctggaaaaacaatattgcttcaaaatattgcacaaagcattgcttacaatcatcca
gactgtgttttaatggtactattaattgatgaaagaccagaagaagttactgaaatgcaa
agattagttaaaggagaagttgttgcttctacttttgatgaacctgcatcaagacatgta
caagtagctgaaatggtcattgaaaaagcaaaaagattagtagaacataagaaagatgta
attattttacttgattcgattacccgtttagcgcgtgcttataatacagtcgtaccagct
tcaggaaaagttttaacaggaggtgttgatgctaatgctttacatagacctaagcgattt
tttggtgctgcacgtaatgtagaagaaggaggcagtttaacaattattgccactgcatta
gttgatacaggttcaaaaatggatgaagtcatttatgaagaatttaaaggaacaggcaat
atggaattgccattatctagaaaaattgcagaaaaacgtgtttttccagctattgattat
aatcgttctggcactagaaaagaagaattattaactttgccagaagaacttcaaaaaatg
tggattcttagaaaaattattcatcctatgagtgaaatagacgcaatggaatttttactt
aataaacttgctatgacaaaaactaacgatgaattttttgatatgatgaaacgttcctaa
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