Buchnera aphidicola F009 (Myzus persicae): BUMPF009_CDS00303
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Entry
BUMPF009_CDS00303 CDS
T03020
Symbol
mfd
Name
(GenBank) Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bapf
Buchnera aphidicola F009 (Myzus persicae)
Pathway
bapf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bapf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BUMPF009_CDS00303 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bapf03400
]
BUMPF009_CDS00303 (mfd)
Enzymes [BR:
bapf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BUMPF009_CDS00303 (mfd)
DNA repair and recombination proteins [BR:
bapf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BUMPF009_CDS00303 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHG61813
LinkDB
All DBs
Position
complement(323365..325797)
Genome browser
AA seq
810 aa
AA seq
DB search
MKITNNPALKNIIDLTYRKKLPNLFQNINNQNKINQLLSFLQTFSGKIIFYLTRKESLKK
ILKFLMENKIYPKYIEKIIDINKKFNYFYMIGTIQNGFIDPKNNLLFLCTKDLLPIIFQK
ESLLKIKNDTTFKKSNLSELFLNDPIIHIEHGIGRYKGLTTIKTASIKSEYLIISYAEGD
KLYLPVSCLHLVAPYTKTSIKDAPLHKLGGEEWNKEKCKIRKTLYDHAARLLNIYANRAS
QKGFLFKKNEEIYQIFCKDCLFKITKDQDKVMKSVLKDMCTSIPMDRLICGDVGFGKTEI
AMRAAFLSVSNKKQVAVLVPTTLLAQQHYDNFKKRFSNWSFNIDILSRFQNKKKQNLLLK
NIANGNIHIIIGTHKLLLKEIEWNSLGLLIIDEEHRFGVNHKEIIQTKHANVDVLTLTAT
PIPRTLNMSMTGIKDVSIIAKPPAQRLAIKTYIQEYNPLLVRKTILREISRGGQVYYIYN
KVQNILNIAERLSKLIPEANIKIGHGQMSNIDLKKVMNEFYHNKFNVLICTTIIESGIDI
PRANTIIIENSDHFGLSQLHQLRGRIGRSSSQAYALFLVNNFNTITVDAKKRLEAISSVN
NFGGGFSLSNQDLEIRGIGKLLGKEQSGHMENIGFSLYMKLLKNAIHILKNGKNTSINQL
LEKPLEIELHVSSLLPDNYIIDVNKRLFFYKKISQAIDEKKIEKIKNELIDQFGPLPLVA
ENLIIIAKIRLIADQIGIKSIQANQKIGVIHFNKNNSVNTQYILQMFEKEPNTWKIESAT
KLKFIWNLNDDYSRLKWIKNILKNLINHNE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattacaaataatccagctttaaaaaatattatagatttaacatatcgaaaaaaa
ttgccaaatttatttcaaaatattaacaatcaaaataaaattaatcaattattatctttt
cttcaaacattttcaggaaaaataattttttatttgacgcgaaaagaatctttaaaaaaa
attttaaaatttttaatggaaaataaaatctatcctaagtatatagaaaaaataattgat
atcaataaaaaatttaattatttctatatgataggtacaatacaaaatggatttatagac
ccaaaaaataatcttttattcctttgtacaaaagatttgttaccgattatttttcagaaa
gaatctcttttaaagataaaaaacgatactacttttaaaaaaagcaatttgtctgaatta
tttttaaatgatcctattatacatatcgaacatggaataggacgttataaaggattaacg
acaataaaaactgcaagcataaaatctgaatatttaataatttcatatgcagaaggtgat
aagttatatttacctgtatcatgtctacatctggttgcaccttatacaaaaacatcaata
aaagatgctcctcttcataaattaggaggtgaagaatggaataaagaaaaatgcaaaatc
cgtaaaactttatacgatcatgctgcacgattattaaatatttatgcgaatagagcctct
caaaaaggatttttatttaaaaaaaatgaagaaatatatcaaattttttgtaaagattgt
ttatttaaaataacaaaagatcaagataaagtaatgaaatctgtattaaaagacatgtgc
acatctattccaatggatcgtttaatttgtggtgatgtaggttttggaaaaacagaaatt
gccatgcgagctgcttttttgtctgtatcaaataaaaaacaagtagctgttttagtaccg
acaactttattggcgcaacagcattatgataattttaaaaaacgtttttctaattggtct
tttaatattgatatattatctagatttcaaaataaaaaaaaacaaaatttacttcttaaa
aatattgcaaatggaaatattcatattatcataggaactcataaattattattaaaagaa
atagaatggaatagtcttggtctattaattattgatgaagaacatagatttggtgttaat
cataaagaaattattcaaactaaacatgctaatgttgacgtattaactttaacagctaca
cctatacctcgcactttaaatatgtctatgactggcataaaagacgtgtcaataatagca
aaacctcctgctcaaagacttgcaataaaaacttatattcaagagtataatcctctatta
gtgagaaaaactatcctacgtgaaatatcacgaggtggtcaagtgtattacatatataat
aaagttcaaaatattttaaatattgctgaaagattatcaaaattaattcctgaagctaat
attaaaataggtcatggacaaatgagtaatatagatttaaaaaaagttatgaatgaattt
tatcataataaattcaatgttttaatctgtactacaattatcgaaagcggtattgatata
ccaagagcgaatacaattataattgaaaattcagatcattttggattatctcaacttcat
caacttcgcggaagaattggtagatcaagctcgcaggcatatgctttatttcttgttaat
aattttaatacaattacagtagatgcaaaaaaaagactagaagctatttcgtcagtaaat
aattttggaggaggattttctttgtctaatcaagatttagaaatcagaggaatagggaaa
ctattaggtaaagaacaaagtggacacatggaaaatataggtttttctctatacatgaaa
ttattaaaaaatgccattcatatattaaaaaatggaaagaatacaagtattaatcaatta
ttagaaaaaccattagaaattgaattacacgtatcttctttattacctgacaattatatt
atagatgttaataaaaggttgtttttttataaaaaaatttctcaagctatagatgaaaaa
aaaatagaaaaaataaaaaatgaattaatcgatcaatttggaccgctacctcttgttgct
gaaaatttaattataattgctaaaattagattaatagcggatcaaataggtataaaaagt
attcaagctaatcaaaaaataggagtgatacattttaataaaaataattcagtaaatact
caatatatattacaaatgtttgaaaaagaacctaatacttggaaaatagaaagtgcaaca
aaattaaaatttatttggaatttaaatgatgattattcacgtttaaaatggataaaaaat
atactaaaaaatttgataaatcataatgagtaa
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