Buchnera aphidicola G002 (Myzus persicae): BUMPG002_CDS00040
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Entry
BUMPG002_CDS00040 CDS
T03021
Symbol
vacb
Name
(GenBank) Vacb
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bapg
Buchnera aphidicola G002 (Myzus persicae)
Pathway
bapg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUMPG002_CDS00040 (vacb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapg03019
]
BUMPG002_CDS00040 (vacb)
03016 Transfer RNA biogenesis [BR:
bapg03016
]
BUMPG002_CDS00040 (vacb)
Enzymes [BR:
bapg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BUMPG002_CDS00040 (vacb)
Messenger RNA biogenesis [BR:
bapg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BUMPG002_CDS00040 (vacb)
Transfer RNA biogenesis [BR:
bapg03016
]
Prokaryotic type
tRNA degradation factors
BUMPG002_CDS00040 (vacb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
DUF2196
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
AHG60994
LinkDB
All DBs
Position
complement(598346..600520)
Genome browser
AA seq
724 aa
AA seq
DB search
MVVDPYQKREAKKYKNSIPSREYISSWLKKCQDLISQKKIERKFGIIHQEEKKALRRRLR
AMERDGQIIYTKNRCYINPDNIKVVQGKVIGHKDGYGFLRIETSQDDLWLSSEQMKFCIH
GDVILAYIVNSDRKGRNSAKFLKILKANDSLIVGRYFSKNKIKFVVPDDTRFNFKILIFS
HRENISIGSIVVVKLKKHPTRNNKAEGLIVEVLGKEMGTNLAIDIALRKHSIPSFWSEDA
QKQLSQISHKINLCDFKNRIDMRHIPFFTIDDEDARDFDDAVFCKKKNNSEEGWNLLVAI
ADVSYYVKPNTALDKAALERGTSVYFPSLVVPMLPEKISTDLCSLNPFKERLCLICEMNL
SNTGELISYKHYEAVICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSYLQKVFNR
DNISKKGIYFENIVAKFVLDSNLRIKNIYQDIRNDAHKFIESCMILANIASASFVQKYNH
PVLFRNHNPPKKNNIVTFRSFLKELGLSLLGGEIPESIHYSNLLKNISNRPEYEMIQTIL
LRSMQQAVYSPNNCGHFGLSLYSYVHFTSPIRRYPDLVLHRVIKCLLSEKKSLSYKDCDS
CLYNIFEMKKIGQHCSMTERRADEANRDVIDWLKCDFMYKKIGDIFTGVISNVTSFGFFV
RLNQFFIEGLVRIASLEDDYYYFDALGLKLIGKSNKNTYCLGDILKVKVYSVNLNERKIE
LSLI
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggtagtagatccctaccaaaaacgagaagctaaaaaatataaaaattctattccaagc
cgagaatacatctcatcttggcttaaaaaatgtcaagatttaattagtcaaaaaaaaata
gaaagaaaatttggtattattcatcaagaagaaaaaaaagcattacgtcgaagattaaga
gcaatggaacgagatggtcaaattatatatactaaaaatcgttgctatattaatcctgat
aatatcaaagtagtacaaggaaaagttataggacataaagatggttacggttttcttcga
atagaaacatcacaagatgacctatggctttcatcagaacaaatgaaattttgtattcac
ggtgatgttattttagcttatattgtaaattctgatagaaaaggacgtaattcagcaaaa
tttttaaaaatacttaaggcgaatgattctttaattgtaggtagatatttttcaaaaaat
aaaataaaatttgtagtgccagatgatactcgttttaatttcaagattcttatattttca
catagagaaaatatttcgataggatcgattgtagttgtaaagttaaaaaaacatcctaca
agaaacaataaagcagaaggattaatagtagaagttcttggaaaagaaatgggtactaat
ttagctatagatatagcattgcgaaaacattctattccatctttttggtccgaagatgct
caaaagcaattatctcaaattagtcataaaattaatttatgtgattttaaaaatcgtata
gatatgagacatattcctttttttactattgatgatgaagatgctcgtgattttgatgac
gctgttttttgtaaaaaaaaaaacaattcagaagaaggttggaatttattagtagcaatt
gcagatgttagttactatgttaaacccaatactgcattagataaagctgctttagaaaga
ggtacatctgtatattttccttcattagttgttcctatgttaccagaaaaaatttctaca
gatttatgttctttaaatccttttaaagaacgtctatgtttgatatgcgaaatgaattta
tctaatacaggagaattaattagctataaacattatgaagcagtaatatgttctcatgga
aggtttacatataatgaaatttttaaaatttggaatggcgatatttttttgcgttctaaa
tacaaaaaattcttgaaagatattgaaaatttatcatatttacagaaagtttttaataga
gataacatttctaaaaaaggtatctattttgaaaatatagtagctaaatttgttttagat
tctaatttaagaattaaaaatatttatcaagatattagaaatgatgcgcataaatttatt
gaatcatgtatgattttagcaaatatagcttctgcttcttttgttcaaaaatataatcat
cctgttttatttcgcaatcacaatcctcccaaaaaaaataatattgttacttttcgttcg
tttttaaaagaattaggtctgtcgttattaggaggagaaataccagaatctatacattat
tcaaatttattaaaaaatatttctaatcgtcctgaatatgaaatgattcaaacaatatta
ttacgttctatgcaacaagctgtttattcaccaaataattgtggtcattttggtttatct
ttatatagttatgttcattttacatcacctattagacgctatcctgatttagtactacat
agagtaataaaatgtttattatcagaaaagaaatcactttcttataaagattgtgattct
tgtttatataatatatttgaaatgaaaaaaataggacaacactgttccatgactgaaaga
cgtgcagatgaagcgaatcgagacgtaattgattggttgaaatgtgattttatgtataaa
aaaataggtgacatatttactggtgtgatttctaatgtcacttcgttcggattttttgtt
cgtttaaatcaattttttattgagggattagttcgtatcgcttctttagaagatgattat
tattattttgatgctttaggtcttaaattaatcggaaaatctaataaaaatacttattgt
cttggtgatattttaaaagtaaaagtttattctgttaatttaaatgaaagaaaaatagaa
ttatctttgatatag
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