Buchnera aphidicola (Aphis glycines): IX46_00180
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Entry
IX46_00180 CDS
T04764
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
baph
Buchnera aphidicola (Aphis glycines)
Pathway
baph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
baph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX46_00180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baph03021
]
IX46_00180 (rpoB)
03400 DNA repair and recombination proteins [BR:
baph03400
]
IX46_00180 (rpoB)
Enzymes [BR:
baph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX46_00180 (rpoB)
Transcription machinery [BR:
baph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX46_00180 (rpoB)
DNA repair and recombination proteins [BR:
baph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX46_00180 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ALD15006
UniProt:
A0A0M3RSD6
LinkDB
All DBs
Position
complement(39489..43517)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPKILDIPYLLSIQLNSYKKFIQIDPEGKYGLEAAFQSVFPIR
GYNGNSELQYVSYRLDETTFDVKECQIRGATYSAPLRVKLRLVIYERDILEPTVKDIKEQ
EVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDILFVRIDRRRKLPVTIILRALNYSTEEILNLFFEKNIFKIDNKKIELE
LVSERLRGETASFDIEKDGKIYIKKGRRITARHIQELKQFAIKSIVVPVEYVLGRIVSKN
YFHPITKEIIILANTELSLEILNKLRELHFSYIETLFTNDLDHGPYISETLRIDSSSDRT
SALMEIYRVMRPGEPLTKEATENLFENLFFSEDRYDLSSVGRMKFNRSLSRKKIKGSGTL
NKEDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRLGLVRVERAVKERLS
VGDLEALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNSYGFLETPYRKVKNRLVT
KEIHYLSAIEEGNYIIAQANTNIDKNNFFVDDLVTCRHKGESSLFNCNQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLVGTGMERAVAVDSGVTIVAKR
SGIVQYVDASRIIIKVNEEETYIGEAGIDIYNLTKYTRSNQNTCINQIPCVQLNEKINKG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSEKVVQEDRFTTIHIQELSCIS
RDTKLGSEEISSDIPNVGEAALCKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRTLEIEDMQLKKVKKDL
TEEFKIFQLSLFLKIKKTLLSCGIKIEHLNKLSFEKCLKINIREVNKQQEIEQIAQQYNE
LKKEFEKKTEIKRRKIIQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDQINKMLKTQENISE
LRKFIQKTFNLGDNLRQKVNLEEFSNEEVLSLAKNLRKGMPIATPVFDGAKENEIKQMLK
FANLPISGQIFLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELENE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgtattcgtaaagattttggaaaacgtcctaaa
attttagatataccatatcttctttcaattcaactgaactcttataaaaaatttattcaa
atagatccagaaggcaaatatggattagaagctgctttccagtcagtatttcctatacgc
ggttacaatggtaattctgaattacaatatgtaagttatcgactagacgaaacaacattt
gacgttaaagaatgtcaaatacgaggagctacttattctgcgcccttaagggtaaaatta
agattagttatttatgaacgagatatactagaacctacagtgaaagatatcaaagagcaa
gaagtgtatatgggcgaaataccattaatgacaaataatggaacttttataattaatgga
acagaaagagttgttgtttctcaattacatagaagtcctggtgtattttttgatagcgat
aaaggaaaaacacattcttctggaaaagttttatacaatgctcgtattattccttataga
ggatcttggttagattttgaatttgatccaaaagatattttatttgttagaattgacagg
cgaagaaagttacctgtaactattattttacgcgctttaaactatagcacagaagaaata
ttaaatttattttttgaaaaaaacatttttaaaatagataataaaaaaattgaactagaa
ttagtttcagaaagactaagaggtgaaactgcttcttttgatattgaaaaagatggaaaa
atatatataaaaaagggacgaagaattaccgcaagacacatacaggagctaaaacaattc
gccattaaatccattgtggttccagtagaatacgttctaggaagaatagtatcaaaaaat
tatttccacccaataacaaaagaaattattattttagctaatacagaattatctttagaa
atactaaataaattacgtgaattacatttttcatatattgagacgcttttcacgaatgat
ttagatcatggtccatatatttcagaaacacttcgcattgattcatcaagcgatagaaca
agtgcattaatggaaatttatcgcgtcatgcggccaggtgagcctcttacaaaagaagct
acagaaaatttatttgaaaatttatttttttctgaagatcgatatgatctttcatctgtt
ggacgcatgaaattcaatagatctttatcacgcaaaaaaattaaaggctcaggaacgtta
aacaaagaagatattattgatgtaataaaaaaattaattgatatccgaaacggtaaggga
gaagtagatgatattgatcacttgggaaacagaagaatcagatcagtaggagaaatggca
gaaaatcaatttagacttggtttagtaagagtagaaagagctgtaaaagaaaggttatca
gtaggagatttagaagctttaatgccgcaagatatgattaatgcgaaaccaatatccgca
gctgtaaaagaattttttggttctagtcaattatctcaatttatggatcaaaataatcct
ttatcagaaattacacataaaagaagaatttcagctttaggattaggtggtttaactaga
gaaagagctggttttgaagtaagagatgtgcatccaacacattacggtcgagtgtgtcca
atagaaactccagaaggtcctaatattggattaattaattcattatcagtatatgcaaga
actaattcatatggttttttggaaacaccttatagaaaagtaaaaaatagattagttaca
aaagagatacactacttatccgcgatagaagaagggaattatattattgcgcaagctaat
acaaacatagataaaaataatttttttgttgatgatttggtcacttgtagacacaaaggt
gaatcaagcttattcaattgtaatcaagttgattatatggatgtatctactcagcaaata
gtatctgttggagcatctttaattccttttcttgagcatgatgatgcaaatagagcttta
atgggagctaatatgcaacgtcaagcagttcctactttaaaaactgataaacctttagtc
ggaacagggatggaaagagcagtagctgtagattcaggcgtgacaattgttgcaaaaaga
agcggtatagtacagtacgtagatgcttctcgaattataattaaagtaaatgaagaggaa
acatatattggagaagcaggtatagatatttacaatttaacaaaatatactcgttccaat
caaaatacttgtattaatcaaataccatgtgttcaactcaatgaaaaaataaataaaggc
gatgtattggcagatggaccatctactgatttaggcgaacttgcattaggacaaaatatg
cgagtggcttttatgccgtggaatggatataactttgaagactctatcttagtttcagaa
aaagttgtacaagaagatcgatttactaccattcatattcaagaactatcctgtatatct
agagatactaaattaggatctgaagaaattagttcagatatacctaatgtaggagaagct
gctttatgcaaattagatgaatcaggtattgtatatattggagcagaagtaactggagga
gatattttagtaggaaaagtaactcctaaaggagaaacacaattaacaccagaagaaaaa
ttactacgcgctattttcggtgaaaaagcatctgatgtaaaagattcatcattaagagtt
ccaaatggggtatctggaactgtaattgatgttcaaatttttacacgagatggtgtaaaa
aaagataaaagaactttagaaattgaagatatgcagcttaaaaaagtaaaaaaagatctt
acagaagaatttaaaatatttcaattaagcttatttttaaaaatcaaaaaaactctctta
tcttgcgggataaaaatagaacatttaaataaattgtcttttgaaaaatgccttaaaatt
aatataagagaagtaaataaacaacaagaaatagaacaaattgcacaacaatataatgaa
ttaaaaaaagaatttgaaaaaaaaacagaaataaaacggcgaaaaataatacaaggtgat
gatcttgcaccaggagtgctaaaaatagtaaaagtatacttagcagtaaaacgtcaaata
caacctggtgataaaatggctggacgacatggaaataaaggagttatttctaaaattaac
cctgttgaagacatgccatatgatgaaaatggtataccagtagatattgtattaaatcct
ttaggagtaccatcacgtatgaatattgggcaaatattagaaacacatttaggaatggct
gcaaaaggcatcggagaccaaattaacaaaatgcttaaaacacaagaaaacatttctgaa
ttaagaaaatttattcaaaaaactttcaacttaggagacaatttaagacaaaaagtaaat
ttagaagaattttcaaatgaagaagtcttaagtttagcaaaaaatttaagaaaaggtatg
cctattgccacaccagtatttgatggggcaaaagaaaacgaaataaaacaaatgttaaaa
tttgcaaatttacctatatccggtcaaatttttttatttgacggtagaacaggtgaaaaa
tttgaaagaccagttacagttggttatatgtatatgttaaaattaaatcatttagtagac
gataaaatgcacgctcgatccactggttcttacagccttgtaacccagcaaccgctagga
ggaaaagctcaatttggtggtcaacgatttggtgaaatggaagtttgggcattagaagcg
tatggagcttcttatacgttacaagaaatgttaactgttaaatctgatgatgtcaatgga
agaactaaaatgtacaaaaatattgtagacggtaatcatcaaatggaacctggaatgccc
gagtcatttaacgttttattaaaagaaattcgttcgttaggaattaatattgaattagaa
aatgaataa
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