Buchnera aphidicola (Aphis glycines): IX46_01525
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Entry
IX46_01525 CDS
T04764
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baph
Buchnera aphidicola (Aphis glycines)
Pathway
baph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX46_01525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baph03400
]
IX46_01525
Enzymes [BR:
baph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX46_01525
DNA repair and recombination proteins [BR:
baph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX46_01525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALD15243
UniProt:
A0A0M4H4J2
LinkDB
All DBs
Position
complement(316020..318428)
Genome browser
AA seq
802 aa
AA seq
DB search
MKIISTSIANKNFLNYHHQQLPSFFKKNRDINNINKIFSFLHDFSGKTIFFITKQECLIE
VLKILNLKNIYPKYIKNIYDVNHKNTFFYVIGNLHQSFIDIKKNFLFISTKEIIKINNNI
NIKPIKNKFLYQLKIHDLIIHIQHGIGRYQGLTTIKTASYESEYLVILYAEENKLYVPIS
SLHLISPYSGNSEKNIVLHKLGSNKWDKEKNKISKNLYDHAVILLNIYANRLSKKGFSFQ
KNEEQYNLFCQDCLFQVTSDQKNAIKSVLNDMNKSIPMDRIICGDVGFGKTEIAMRAAFI
CISNKKQVVVLVPTTLLAEQHFNNFSKRFANWSINIDILSRFRSIKEKKKILENISIGKI
NILIGTHKILFENIEWYNPGLLIIDEEHRFGVIHKEIIKKIYSHIDILTLTATPIPRTLN
MAMHGIKDLSIISNPPKERKKIQTFINEYNPILIKKAISQEISRGGQVYYIYNKIQGIDN
IATKLLNLIPNAKIKIVHGKMNHIDLKNIMNEFYQNCFNVLVCTTVIESGIDIPKANTIV
IENADHFGLSQLHQLRGRIGRSNNQGYAFLFVNNFKKVTLDAQKRLEAIAMTNNFGGGFN
LSNRDLEIRGIGELLGKEQSGHIDCIGIDLYMKFLHKTIKIYKNGEKISLENLIKKSYIE
LYIPALLPKNYIFDLNQRLFFYEKIEHAKSEKEIKIISLELLNQFGKLPIYAKNLILIAK
IKLLTKEIGISHIKSNKNIGIIKFNKKNSINMQYLLSIFHKEPDLWKMINSTKLKFFHSF
QSDTMRINWIINLLKHLKKSNS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattatctctacaagtatagcaaataaaaatttcttgaactatcatcatcagcag
ttaccaagtttttttaaaaaaaatagagatataaataatattaataaaattttttctttt
ttacatgatttttcaggaaaaactattttttttataacaaaacaagaatgtttgatagaa
gttttaaaaattttgaatctaaaaaatatttatcccaaatatataaaaaacatttatgac
gttaatcataaaaatacttttttttatgttataggaaacttacatcaaagttttatagat
attaaaaaaaattttttatttatctctacaaaagagataattaaaattaataataatata
aatattaaacctattaaaaataaatttttatatcaattaaaaattcacgatctcatcata
catatacagcatggaattggaagatatcaaggattaactacaataaaaacagctagttat
gagtcagaatatttagtaattttatatgcagaagaaaataagttatacgtgcctatttca
tctttacatttaatttctccgtattctggaaattcagaaaaaaatattgttttacataaa
ttaggtagtaataaatgggataaagaaaaaaataaaattagtaaaaatttatatgatcat
gcggtaattttattgaatatttatgcaaatagattatctaaaaaaggtttttcatttcaa
aaaaatgaagaacaatataatcttttttgtcaagattgtttatttcaagtcacttcggat
caaaaaaatgctataaaatcagtattaaatgatatgaataaatctattcctatggataga
atcatttgtggtgatgtaggttttggaaaaacagaaattgcaatgcgggctgcttttata
tgtatatctaataaaaaacaagttgttgttttagttccgacaacactactagcagagcaa
cattttaataatttttcaaaaagatttgctaattggtctataaatatagatatattatct
agatttcgaagtataaaagaaaagaaaaaaattttagaaaatattagtattggtaaaatt
aatatattaataggtactcataaaattttatttgaaaatattgaatggtataatcctggt
ttgttaattattgatgaagagcaccgatttggtgtaattcacaaggaaataattaaaaaa
atatattctcatattgatatattaactttaacagctacacctatccctcgtacattaaat
atggcaatgcacggaataaaagacttatctattatatctaatcctccaaaagaaagaaaa
aaaatacaaacttttataaatgaatataatccaattttaataaaaaaagcaatttctcag
gaaatatctagaggcggacaagtatattatatatataataaaatacaaggaattgataat
atagctacaaaattattaaatttaattcctaatgctaaaattaaaatcgttcatggtaaa
atgaatcatattgatttaaaaaatataatgaatgaattttaccaaaactgttttaatgta
ttagtttgtactactgttatagaaagcggtattgatatacctaaagcaaacactattgtt
attgaaaacgcagatcattttggtttatctcagttacatcaacttagaggtagaattgga
cgttccaacaatcaaggatatgcttttttatttgttaataattttaaaaaagttacatta
gatgctcaaaaaagattagaagcaattgctatgacaaacaattttggagggggatttaat
ttatctaatagagatttagagattagaggaataggtgaattacttggaaaggaacaaagt
ggtcatattgattgtataggaattgatttatacatgaaatttttacataaaactattaaa
atttataaaaatggagaaaaaatatcattagaaaatttgattaaaaaatcatatattgaa
ctatatatccctgctttattgccaaaaaattatatctttgatttaaatcagcgattgttt
ttttatgaaaaaattgaacatgctaaaagtgaaaaagaaattaaaataatatctttagaa
ctgttaaatcaatttggaaaactaccaatatatgctaaaaatttaattttaattgcgaaa
attaaattattaacaaaagaaattggtatttcacatattaaatctaataaaaatatagga
attataaaatttaataaaaaaaattcaattaatatgcaatatttactttcaatttttcac
aaggaacctgatctttggaaaatgattaattctacaaagttaaaattttttcatagtttt
cagagtgatactatgcgtataaattggattataaatttattaaaacacctaaaaaaatca
aatagttaa
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