Ditibartonella choladocola: BBC0122_009720
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Entry
BBC0122_009720 CDS
T05086
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bapi
Ditibartonella choladocola
Pathway
bapi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bapi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBC0122_009720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapi03021
]
BBC0122_009720
03400 DNA repair and recombination proteins [BR:
bapi03400
]
BBC0122_009720
Enzymes [BR:
bapi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBC0122_009720
Transcription machinery [BR:
bapi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBC0122_009720
DNA repair and recombination proteins [BR:
bapi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBC0122_009720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF8806
Motif
Other DBs
NCBI-ProteinID:
AQT47094
UniProt:
A0A1U9MGR7
LinkDB
All DBs
Position
1114530..1118738
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQAPTQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKMHQLLSEEEYMMAVDEFGPDQFTA
LIGAEAIYELLAAMDLQKIAADLRAELAETTSDLKIKKLMKRLKIVENFIESGNRPEWMI
MKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKERPEVWDILEEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVCEHEPGEGMAFGDMGELQHALD
SKVVTLHTKIKGRVKSVDADGNIVSKIYDTTPGRLIIGETLPKNPNIKFDIVNQEMTKKN
ISKMIDHVYRHCGQKETVMFCDRIMSLGFANACRAGISFGKDDMVIPESKARLVQETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPVTGRQKPMNSIY
MMSHSGARGSPNQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISEVDCGTDKGLTMQAIVDAGQVVASLGQRILGRT
ALHDIIHPTTGEVIVEGGRMIEEADVAKIEAAGIQSVQIRSALTCETRVGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDTSYLEASYEGKVELRNRK
VVRNSEGHLVVMGRNMAILIKDENGKERASHRITYGARIFVDDGDVVKRGQRIAEWDPYT
RPIMTEVEGYVGFEDMLDGLSVTETTDESTGITKRQVIDWRANPRGAELKPAIVIYADKK
GSKIAKLSKGGDARYMMSVETILSVEPGAHVKAGDVIGRLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEIDGTIRFGRDYKNKRRITIEPNDDTVEPVEYLIPKGKPFHLQDGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQSVYRLQGVVINDKHIEVIVRQMLQK
VEITDSGDSGYIPGDNVDRIELQEVNDRLIEEGKKPASGNPVLLGITKASLQTPSFISAA
SFQETTRVLTEAAVAGKMDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATARDDLIVDEH
RKANGGDKANAMLSDMTHTAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggcgcctacacagacgtttgattcc
atcaggatatcaatcgccagccctgagaagattctgtcctggtcttatggcgaaatcaaa
aagcctgagaccattaactaccgtacgttcaagccagagcgtgacgggcttttctgcgca
cgtattttcgggccgatcaaagattatgaatgtctatgcggcaaatacaagcgcatgaag
tataaaggcattatttgcgaaaaatgcggcgttgaagtaactctttcacgtgttcgccgc
gagcgtatggggcatatcgaacttgctgctccagtcgcacatatatggtttttgaaatca
ctgccgagccgtatcggtacacttcttgatatgactctcaaggatatcgagcgtgttctt
tatttcgagaactacattgtaaccgaacccggattgacttcgctcaaaatgcatcagctt
ctttccgaagaagaatatatgatggcggttgacgaattcgggccggaccagtttaccgct
ttgatcggtgcagaagcgatctatgagctgctcgcagcaatggatttgcagaaaatagct
gccgatctgcgtgcggaactcgcagagacgacatcggatttgaaaatcaagaaattgatg
aaacgtctgaaaatcgtcgagaattttatcgagtccggaaatcgtccggaatggatgatt
atgaaggttattccggttattcctccggatttacgcccgttggttccgcttgatggtggc
cgttttgcgacatccgaccttaacgacctctatcgtcgcgttatcaaccgtaacaaccgt
ttgaaacgtttgatcgaacttcgcgcacccggcattatcgtacgcaatgaaaagcgtatg
ttgcaggaagccgtcgatgctctgttcgataatggtcgtcgtggacgtgtcattaccggt
gccaataagcggccgctgaaatcgctttcggatatgctgaaaggcaagcagggacgtttc
cgtcaaaacctgcttggtaagcgcgtcgattattccggtcgttcggttatcgttacaggt
cctgaactgaagttgcatcaatgcggcttgccgaaaaaaatggctttggaactgttcaag
ccgtttatttacgcacgcctcgacgcaaagggtttttcgtcaaccgtaaaacaagccaag
aagctcgttgaaaaagaacgtcctgaagtttgggatattctcgaagaggttatccgtgaa
caccccgttcttttgaaccgcgctccgaccttgcaccgtttgggtattcaggcttttgaa
ccgaccttgattgaaggtaaggcaatccagcttcatccgctggtttgtaccgctttcaac
gcggatttcgatggcgaccaaatggctgtccacgtaccgctgtcgcttgaagcccagctt
gaagcccgcgtcctgatgatgtcgaccaacaatattctgcatcctgccaatggcgcgccg
attattgttccctcgcaagatatggtgctcggcctttattacctgtcgattgtttgcgaa
catgaaccgggtgagggcatggcgtttggtgatatgggtgaattgcaacatgcgttggat
agcaaagttgtaacgcttcacacaaagatcaaaggccgcgttaaaagtgttgacgccgat
ggcaatatcgtctcgaaaatttacgacacaacaccgggacggcttatcatcggtgaaaca
ttgccgaaaaatccgaacatcaagttcgatatcgtcaatcaggaaatgaccaaaaagaac
atttccaagatgatcgaccatgtttaccgtcactgcgggcaaaaagaaacagtgatgttc
tgcgaccgcatcatgtcactcggttttgccaatgcttgccgtgccggcatttcgttcggt
aaggacgatatggttataccggaaagcaaggcaagactggttcaggaaaccgaggctttg
gccaaggaatatgaacagcaatataatgacggtcttattacacagggcgaaaagtacaac
aaggttgtcgacgcttggggtaaatgtaccgatcgtgttgccgacgagatgatgaaacgt
attcaggcggttgaattcgatcccgtaacagggcgtcaaaaaccgatgaattcgatttac
atgatgtcccactccggtgctcgtggatcgccgaaccagatgaagcagttgggcggtatg
cgtggcttgatggctaaaccttcgggcgaaatcatcgaaacgccgattatctccaacttc
aaagaaggtctgactgtgaacgagtactttaactcgacacacggtgcccgtaagggactt
gccgatacagccttaaagactgcgaactccggttatttgacccgtcgtcttgttgacgtt
gctcaggatgctatcatttccgaggttgattgcggaacggataagggcctgacaatgcag
gcgatcgtcgatgccggtcaggttgttgcctctctcggccaacgtattcttggtcgtacc
gcacttcatgatattattcatccgactacgggcgaagttatcgttgaaggcggccgcatg
atcgaggaagcagacgttgccaagatcgaagctgccggtatccagtctgtccagatccgt
tcggcactgacttgtgaaacccgcgtcggggtttgcgccaagtgctatggtcgtgatctg
gcacgtggtacacctgtcaatcagggtgaagcagtgggtgttattgccgcgcagtctatc
ggcgaacccggtacacagttgacaatgcgtacattccacttgggtggtactgcacaggtt
gttgatacttcctatctggaagcatcctatgaaggtaaggttgaactgcgcaatcgtaag
gttgttcgcaattctgaaggccatctggtcgttatgggccgtaatatggctatccttatc
aaggatgaaaatggcaaggaacgcgcttcccaccgtattacctacggtgcccgcatcttc
gtcgatgatggcgatgtggttaaacgcggccaacgtattgccgaatgggatccgtatacc
cgtccgattatgactgaagtcgagggctatgtcgggttcgaggatatgcttgacggtctg
tctgttacagagacaaccgatgaatcaaccggtatcaccaaacgtcaggttattgactgg
cgcgccaacccccgtggtgcagaactcaaacctgccattgttatctatgcggataagaag
ggcagcaagattgccaagctctcgaagggcggtgatgcgcgttacatgatgtcggtggaa
accattctttcggttgaaccgggtgctcatgtcaaagccggtgacgtgatcggacgtctg
ccgatggaaagcgccaagaccaaggatattaccggtggtcttccgcgtgttgccgagctt
tttgaagcccgtcgtccaaaggatcatgccattattgctgaaattgatggtacaatccgc
tttggacgcgactacaagaacaaacggcgtatcacgatcgaaccgaatgatgacacggtc
gagcctgtcgaatatcttattccgaagggcaagccgttccatctgcaggatggtgaccag
atagaaaagggtgattacatccttgacggtaatccggcaccgcatgatattctggcaatc
aagggcgtggaagcattggcttcctatctcgtcaacgagatccagtcggtttatcgcctt
cagggtgttgtgattaacgataagcatatcgaagtcattgttcgccagatgctgcaaaaa
gtcgaaattaccgattccggtgattcaggctatattccgggtgacaatgtcgaccggatc
gagcttcaggaagtcaatgatcggctcatcgaagaaggtaagaaaccggcaagcggtaat
cctgtcttgttgggtattacaaaagcttcgttgcaaacgccgtcgtttatttcggctgct
tccttccaggagaccacacgcgtgcttacagaagctgcggttgccggaaagatggatacc
ttgcagggcttgaaggaaaacgttatcgttggtcgtcttatccctgccggtacaggtggc
acaattgcccaaatccgtcgtattgccacagctcgtgacgatttgatcgttgacgaacat
cgcaaggcaaatggcggtgataaagcaaatgcaatgttgtcggatatgacacatacggct
gctgaataa
DBGET
integrated database retrieval system
