Bartonella apis: BBC0122_011530
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Entry
BBC0122_011530 CDS
T05086
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bapi
Bartonella apis
Pathway
bapi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBC0122_011530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapi03019
]
BBC0122_011530
Messenger RNA biogenesis [BR:
bapi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBC0122_011530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AQT47270
UniProt:
A0A1U9MHS0
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Position
1320367..1322043
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AA seq
558 aa
AA seq
DB search
MASRKNNELVFLPLGGVGEIGMNLGVYGYGPEDNRKWLIVDLGVSFAGPELPGVDLVMPD
IRFLENERPNILGLVVTHAHEDHFGAILDLWPKLKIPVYCTAFTAGLLETKREIDYNSYD
VAVTLFKAGDRFELGPFSIEAIAVAHSIPEPVALAIKTPLGTVVHTGDWKIDLEPSLGAL
TDEKRFRELGKEGVLALVCDSTNSMRDGVSPTEHDVFKSLTEIISGEKGRVAITTFSSNV
GRIISIAKAAKEAGRQVLLVGRSIKRSVNVAEELGYLEGIDPFLSEEDYPYIPRDKIVMV
LTGSQGEQRAALAKLSRDEMRSLALTAGDTVIYSSRSIPGNERAIIDTQNRLTDMGVKII
TDHDALVHVSGHPRRNDLKKMYEWVKPQILVPVHGEALHLAAQTALGRQAGIKQVAEIRN
GDMLKLAPEPAEIVDEVPVGQIYKDGNLIGNEEELGISQRRKLSYVGQVSASFLLDKHHN
LVDVPEVVCFGLPETDDEGNLFDDIITDAIETTIESIPRVKRKDDDMVREAVRRAVRASV
NEIWGKKPVCTIFSHRLR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacgcaaaaataatgagttggtttttctaccacttgggggcgtaggcgagatc
ggtatgaatctcggcgtttatgggtacggtcctgaagataaccggaaatggctgatcgtt
gatctcggtgtcagttttgcaggtcccgagttaccgggtgttgatcttgtcatgccggat
atacgttttctggaaaacgaacgcccgaatatattagggttggtcgtaacgcacgcccat
gaagaccatttcggcgcgatattggatttgtggccgaaattgaagatacctgtttactgt
accgcatttaccgcaggcttgttggaaacaaagcgcgaaattgattacaattcttatgat
gtggcggttactctgttcaaagccggtgatcgttttgaactggggccgttttcaatcgaa
gcaatagctgttgcccattctattcccgaaccggtagcattggcaattaaaacgccgctc
ggaacggttgttcacaccggcgattggaaaattgatcttgaaccgtcacttggcgcctta
actgatgaaaagcggtttagagaattgggcaaagagggcgtacttgcactcgtctgcgac
tcgacaaattcgatgcgggacggcgtatcaccgacagaacatgacgtttttaaaagcctg
accgaaataatctcaggtgaaaaaggacgcgtcgcgattacaactttttcatccaatgtc
gggaggattatttcaatagcaaaggcggccaaggaagctggccgacaggttttactggta
ggccgctcgataaaacggagtgtcaatgttgccgaagaactcggctatcttgaaggcatt
gatccgtttctgagtgaggaagactatccatatattccgcgcgataaaatcgttatggtt
ttgacgggaagtcaaggagagcaaagagcagcacttgccaaattgtctcgtgatgaaatg
cgttcgcttgcgttaacggctggcgatacggttatttactcttcgcgcagtattcccgga
aatgaaagagctattatcgatacgcaaaaccgcctgacagacatgggtgtgaagattatc
accgatcatgacgcacttgttcatgtttccggacatccacgtcgtaacgacctcaagaaa
atgtatgagtgggtaaaaccgcagattttggttccggttcatggtgaggctcttcatctg
gcagcacaaacggctttggggcgtcaggcgggtatcaaacaagtggcagaaatacgcaat
ggcgatatgttgaagcttgcgcctgaaccagccgaaattgttgatgaagttccggttgga
caaatttataaagacggaaatctcattggcaatgaagaagaattggggattagtcaaagg
cgaaaattaagctatgtagggcaggtatcagcgtcattcctgttggacaagcaccacaat
ctcgtcgatgtgcctgaagttgtctgtttcggtttgccggaaacagatgacgaggggaat
ctttttgatgacattattacagacgcaatcgaaacgacgattgaaagtattccccgtgta
aagcgtaaagatgacgatatggttcgggaagctgttcgacgggcggtcagagcatctgtt
aacgaaatatggggcaaaaaaccggtttgcacaattttctcccacaggttgagataa
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