Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00103
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Entry
BUMPUSDA_CDS00103 CDS
T03022
Symbol
rpoa
Name
(GenBank) Rpoa
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bapu
Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bapu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BUMPUSDA_CDS00103 (rpoa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapu03021
]
BUMPUSDA_CDS00103 (rpoa)
03400 DNA repair and recombination proteins [BR:
bapu03400
]
BUMPUSDA_CDS00103 (rpoa)
Enzymes [BR:
bapu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BUMPUSDA_CDS00103 (rpoa)
Transcription machinery [BR:
bapu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BUMPUSDA_CDS00103 (rpoa)
DNA repair and recombination proteins [BR:
bapu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BUMPUSDA_CDS00103 (rpoa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AHG59902
UniProt:
W0P380
LinkDB
All DBs
Position
complement(550248..551237)
Genome browser
AA seq
329 aa
AA seq
DB search
MQNSIMDFLKPRLVDIEQISDTHTKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGIQEDVLEILLNLKGLAVKVYGKDEVFLTLNKSGIGSVTAADIIHDGD
VEIIKPEHVICNLTYENASIKMRIKVQRGRGYIPASSRIHVEDDLRPIGCLLVDACYSPI
DRISYNVEAARVEQRTDLDKLIIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVREP
EIKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDILASRNLSLGMRLENWPPSSILDE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagaattctattatggattttttaaaaccacggttagttgatattgaacaaattagt
gatactcatactaaagttactttagaaccattagaaagaggttttggccatacactgggt
aatgcgctgcgcagaattcttctttcttctatgccaggatgtgcagttactgaagtcgag
atagatggcgtacttcatgagtatagtactaaagaaggaatacaagaagatgttttagaa
atattgttaaacttaaaaggattggctgtaaaagtatatggtaaagatgaagtttttctt
acattaaataaatctggaattggttctgtcactgcagcagatattatacacgatggtgat
gtagaaattatcaagccagaacatgtcatttgtaacttaacatatgagaatgcttcaatt
aaaatgagaataaaagtacaacgcggaagaggttatattcctgcttcttccagaatacat
gttgaagatgatttacgaccaataggttgtttattagttgatgcttgttatagtcctata
gatcgaatttcttataatgtagaagcagcacgtgtagaacaaagaacagatttagataaa
ttaattattgaaatggaaactaatggaactattgatccagaagaagctattagacgtgca
gccactattttagctgaacaattagaagcttttgttgatttaagagacgtacgagaacct
gagattaaagaagaaaaacctgaatttgatccaattttattgcgtccagtagatgattta
gaattaacagttcgttctgctaattgtctaaaagcagaagctatacattatattggtgat
ttagtccaaagaactgaagtagaacttttaaaaacgcctaatttaggtaaaaaatcttta
actgaaatcaaagatatattagcttctcgtaatttatctcttggtatgagattagaaaat
tggccgccgtcaagtattcttgatgaataa
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