Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00223
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Entry
BUMPUSDA_CDS00223 CDS
T03022
Symbol
pnp
Name
(GenBank) Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bapu
Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUMPUSDA_CDS00223 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapu03019
]
BUMPUSDA_CDS00223 (pnp)
03016 Transfer RNA biogenesis [BR:
bapu03016
]
BUMPUSDA_CDS00223 (pnp)
Enzymes [BR:
bapu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BUMPUSDA_CDS00223 (pnp)
Messenger RNA biogenesis [BR:
bapu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BUMPUSDA_CDS00223 (pnp)
Transfer RNA biogenesis [BR:
bapu03016
]
Prokaryotic type
tRNA degradation factors
BUMPUSDA_CDS00223 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
S1_2
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AHG60015
UniProt:
W0P3R9
LinkDB
All DBs
Position
complement(413672..415729)
Genome browser
AA seq
685 aa
AA seq
DB search
MARQATAAVMASMDDTAVFVTVVGQKKIHTGQKFFPLTVNYQERTYAAGRIPGGFFRREG
RPSENEILIARLIDRPIRPLFPKNFLNEVQIIATVVSVNPQINPDIISIIGASAALSLSG
IPFYGPVGAARVGYINNQYLLNPTSDDMKNSSLDLVVSGTQNAVLMVEAESKILSEEKIL
EAIIFGHQQQQVVINNIRSLSNEASKLPWTTSYPDINKALELKIIELSEKEISSAYLIFN
KQERFDRLNSIKEEIIKTFSDNNSNVSVLEIEAIFQKIEKKIVRKRILNNETRIDGREKD
MIRALDVRTGVLPRTHGSALFTRGETQSLVAVTLGTSRDAQNLDELLGDRTDNFLFHYNF
PPYSVGEIGTVGSPKRREIGHGRLAKRSLLAVMPKLDDFPYTIRIVSEITESNGSSSMAS
VCGASLALMDAGVPIKSAVAGISMGLVKEGEQYVLLSDILGDEDHLGDMDFKVSGTDIGI
TALQMDMKIEGITNEIIHTALNAARLARLHILNVMNQALSKSRNEISELAPRIHTIKISP
EKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKISAAVSEKAKHAIRRIEEITAEIEVG
KIYSGKVTRIVDFGAFVSIGFGKEGLVHISQISDKRVDKVSDHLKIDQVISVKVLEIDRQ
GRLRLSIKEIENSIISNKIINHDII
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacaagcgacagcagctgttatggcaagtatggatgatacagcagtttttgta
actgttgtagggcaaaaaaaaatacatacaggtcaaaaattttttccacttactgttaat
tatcaagaacgtacatatgctgcaggtcgtataccggggggattttttagaagagaagga
cgtccaagtgaaaatgaaatattaatagctcgtttgatagatagacctattcgacctcta
tttcctaaaaattttttgaatgaagttcaaattattgcaacagttgtatcagttaatcct
caaattaatcctgatataatttctattataggcgcatcagcagcactgagtttatcgggt
attccattttatggtccagtaggtgctgcaagagtgggttatattaataatcaatactta
ttaaatcctacaagtgatgatatgaaaaatagttctttagatttagttgtttcaggaact
caaaacgctgttcttatggtagaagcagaatcaaaaatacttagtgaagaaaaaattctt
gaagctattatttttggtcatcaacaacaacaagtagtaattaataatattcgttcttta
tcaaatgaagctagtaaattaccttggacaacatcttatccagatataaataaagcatta
gaattgaaaattatcgaattatctgaaaaagaaataagttctgcttatttaatttttaat
aaacaagaaagatttgatagattaaattctattaaagaagaaataataaaaacattttct
gataataattcgaatgtttctgtgttagaaatagaagctatttttcaaaaaattgaaaaa
aaaattgtgcgtaaacgtatattaaataatgaaacgcgaattgatggacgagaaaaagat
atgattcgtgcattagatgtgcgtactggtgttttacctagaacacatggttctgcttta
tttactagaggagaaacacaatctttagttgcagtaactttaggaacatctcgagatgca
caaaacttagatgagttattaggagatagaacagataattttttatttcattataatttt
cctccttattctgttggagaaataggaacagtaggatcaccaaaaagacgtgaaattgga
catggtcgtcttgctaaaagaagtttattagctgtgatgccaaaattagacgattttccg
tatactattagaatagtttctgaaattactgaatcaaatggttcgtcttccatggcttct
gtttgtggagcttctttagctttaatggatgctggtgtacctattaaatctgctgttgct
ggtatatcgatgggtttagtgaaagaaggagaacaatatgtactactttcagatatttta
ggggatgaagatcatttaggagatatggactttaaagtttctggaacagatataggtatt
acagcattacaaatggatatgaagatagagggtattactaatgaaattatacatacagct
ctaaatgcagcaagattagctcgattacatattttaaatgtaatgaatcaagcattaagt
aaatcaagaaatgaaatttctgaacttgctcctcgtatccataccattaaaattagtcct
gaaaaaataaaggatgtaataggtaaaggaggttctgttattagaatgcttactgaagaa
actggtactataattgaaattgaagatgatggtacagttaagatatcagctgctgttagt
gaaaaagcaaaacatgctatccgcagaattgaagaaattacagcagaaattgaagtagga
aaaatttattcaggaaaagttactcgtattgttgattttggtgcttttgtttctatcggt
tttggaaaagaaggtttagttcatatttcacaaatttctgataaacgagttgataaagta
tctgatcatttaaaaattgatcaagtaatctctgtaaaagttttagaaatagatcgtcag
ggtcgtttgaggttaagcataaaagaaatagaaaattctattatttctaataaaataata
aatcatgatattatctga
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