Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00224
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Entry
BUMPUSDA_CDS00224 CDS
T03022
Symbol
dead
Name
(GenBank) Dead
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bapu
Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bapu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUMPUSDA_CDS00224 (dead)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bapu03019
]
BUMPUSDA_CDS00224 (dead)
03009 Ribosome biogenesis [BR:
bapu03009
]
BUMPUSDA_CDS00224 (dead)
Enzymes [BR:
bapu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BUMPUSDA_CDS00224 (dead)
Messenger RNA biogenesis [BR:
bapu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BUMPUSDA_CDS00224 (dead)
Ribosome biogenesis [BR:
bapu03009
]
Prokaryotic type
rRNA helicases
BUMPUSDA_CDS00224 (dead)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
POTRA_2
Motif
Other DBs
NCBI-ProteinID:
AHG60016
UniProt:
W0NZT0
LinkDB
All DBs
Position
complement(411456..413246)
Genome browser
AA seq
596 aa
AA seq
DB search
MTHIESTFSFLGLNPFIIQSLTEMGYVKPSPIQAACIPLLLKGRDVLGMAQTGSGKTAAF
ALPLLHNLDINLKAPQILVLAPTRELAVQVAEAFSDFSKHMIGIHVLPLYGGQRYELQLR
ALKQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKD
HQTALFSATMPEAIRRISKRFMKNPEEIKIQSNISTRPDIKQSYWMVCSRKTDALIRFLE
AEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIA
TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTIKQSIPEVQLPKIELLSKRRLEQFAKKVQQQLESRDLEQYSALLDKLYFTDDLDIKTL
AAALLKMAQGERPLIIKPDLVINHRLSKEERRREDNRNSRIRRERRDNKDIDLYRIEVGR
NDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYATIELPKGMSKDLLQYLTRTRILNKPI
NIKLLRDSRVYETKTTNRTTFNKDKNSNRRFSENRLNKSNFSKNESKTSFSRRRNV
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgactcatattgaaagcacattttcttttcttggtttaaacccttttattatccaatct
ttaactgaaatgggatatgttaaaccttctcctatacaagcagcgtgtattcctttgctc
ttaaaaggacgtgatgtattaggcatggcacaaaccggaagcggtaaaactgccgcattt
gcattgccgttgttacataatcttgatattaatttaaaagctcctcaaatattagtatta
gctcctacaagagaattagcagttcaagtagctgaagcattttcggatttttctaaacat
atgataggcatacatgtattacctttatatggtggacaaagatacgaattgcaattacgt
gctttaaaacaaggacctcaaattgttgtaggaactccaggacgtttattagatcattta
aaacgaggaactcttaatctttcaaatttacatggattagttttagatgaagcagatgaa
atgttacgcatgggatttatagaagatgtagaaactattatggcacaaattcccaaagat
catcagactgcattattttctgctacaatgccagaagcaatacgtcgaatttctaaacga
tttatgaaaaatccggaagaaataaaaatacaatctaatattagtacacgtccagatatc
aaacaaagttattggatggtctgtagtcgaaaaactgatgcgttaattcgatttttagaa
gctgaagatttttctgctactattatttttgttaaaactaaaaatgcaactttagaagta
tcagaagctttagaacgtaacggatataatagtgctgcattaaatggagatatgaatcaa
gctttacgagaacaaaccttagaaagattaaaaaatggtcgattagatattctaattgct
acagatgttgcagcacgcggtttagatgttgatcgtattagttttgttataaactacgat
attcctatggattcagaatcttatgttcaccgtataggtcgtacaggtcgtgcaggtcgt
gcaggtcgtgcattattatttgttgaaaatcgtgaacgtcgtttgttacgtaatatagaa
cgtactatcaaacaatctattccagaagtacaattaccaaaaattgagttattatctaaa
agacggcttgaacaatttgcaaaaaaagtacaacagcaattagaaagtcgagacttagaa
caatatagtgctttgttagataaactatattttacagatgatttagatataaaaacttta
gcagctgctttattaaaaatggctcaaggagaacgtcctttaattatcaaacctgattta
gtcatcaatcatcgtttatctaaagaggaacgtagacgagaagacaatcgtaacagtcga
atacgtcgagaacgtcgtgataataaagatatagatttatatcgcattgaagtaggacgt
aacgatggagtagaagtacgtcatattgttggagctattgctaatgaaggaaatattaat
agtcgtaatattggaaatattaaacttttttcttcctatgctacaattgaattacccaag
ggaatgtcaaaagatttattacaatatttgacacgtactagaattttaaacaaacctatc
aatataaaattattacgtgactctcgagtttacgaaactaaaacaacgaaccgtactaca
tttaataaagataaaaatagcaatcgtcgtttttctgaaaatcgtttaaataaatctaat
ttttctaagaacgaatcaaaaacgtctttttctcgtcgtaggaatgtataa
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