Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00330
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Entry
BUMPUSDA_CDS00330 CDS
T03022
Symbol
rnb
Name
(GenBank) Rnb
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bapu
Buchnera aphidicola USDA (Myzus persicae)
Brite
KEGG Orthology (KO) [BR:
bapu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bapu03016
]
BUMPUSDA_CDS00330 (rnb)
Enzymes [BR:
bapu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BUMPUSDA_CDS00330 (rnb)
Transfer RNA biogenesis [BR:
bapu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BUMPUSDA_CDS00330 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AHG60115
UniProt:
W0P420
LinkDB
All DBs
Position
293054..294991
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AA seq
645 aa
AA seq
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MFQNNPLLAQLKKNLHAKTPRVEGIVKSTERGFGFLEVDAQKSYFIPPKNMKKVMHGDKI
VALLKIEQEREIVEPERLIEPFLNRFVGKIEKKDNRLFIIPDYPFLKTLITCQPNKNCSA
FFHHGDWAVAKLIKHKLRGDYLFYAELIEKIISEDDPLTPWWVTLARHNLDKKEPLFEKN
DLILKENYPRKDLTDLDFITIDNSNTKDIDDALFIHEDLNGQFYLTVAIADPTAYIKQDS
KLDLIASKRGFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACNIIILKDGSISKNVD
FFLAWIKSKSKLSYENVSDWLEKSSTWIPKTKSIEKQILLLHRLCLLRIKWREVNAVLFK
DSLEYRFHLSDEGKVIDIFIEKRRIAHKIIEEAMIIANISAANFLSHHLGFGIYNIHTGF
DLVNAENAVTFLKNYHLYFTVKEITTLKGFCKLRRILNMLSNSYIDSRMRRFQSFGDFSI
MPGPHFALGFSKYATWTSPIRKYSDMINHRLLKAIINKEKPIKPSEDIKLKISEQKRRNR
ISERDVSDWLYTILLKKKKYENKKFKAEIIDIARSGMRARLIENGANVFIPGVFLHPIRE
ELIFNQEIGKVFINGIVQYKVSDYIDVTLSEIRQETRSIIAKPEN
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaataatccattacttgcacagttaaaaaaaaatctacatgctaaaactcca
agagttgaaggcatagtaaaaagtactgaaagaggatttggatttttagaagttgatgct
caaaaaagttattttatacctccaaaaaatatgaaaaaagtaatgcatggagataaaata
gttgcattattaaaaatagaacaagaaagagaaattgttgaacctgaaagattaattgaa
ccatttttaaatagatttgttggaaaaatagaaaaaaaagataacagattatttattata
cccgattatccatttttaaaaactcttataacctgtcaacctaataaaaattgttcagct
ttttttcatcatggagattgggcagtagctaaattaattaaacataaactaagaggagat
tatcttttttatgctgaattaattgaaaaaattatatcagaagatgatccattaacacca
tggtgggtaactttagcacgtcataatcttgataaaaaagaacctttatttgaaaaaaat
gatctcattttaaaagaaaattatccaagaaaagatctaacagatttagattttattact
atagataatagcaatactaaagatattgacgatgccctttttattcatgaagatttgaat
ggtcaattttatttaactgtagcgattgcagaccctactgcttatataaaacaggatagt
aaattagatttaatagcatctaaaaggggttttacaaattatttgccaggatttaacatt
ccaatgttacctcgaaatttatcagaagatatatgttcattaaatcctaataaaagacgt
cctgtattagcatgtaatattattatattaaaagatggaagtatttctaaaaatgtcgat
ttttttttagcatggatcaaatcaaaatcaaaattatcttatgaaaatgtttcagattgg
ctcgaaaaatctagtacatggataccaaaaacaaaatctattgaaaaacaaatattactt
ttacatcgtctatgtttattacgtataaaatggagagaagtaaatgcagtattatttaaa
gatagcttagaatatcgctttcatttatcagacgaaggaaaagttattgatatttttatt
gaaaaacgtcgtattgctcataaaataattgaagaagcaatgataattgctaatatatct
gcagctaattttttatctcatcatcttggttttggcatatataatatacatactggtttc
gatcttgttaatgctgaaaatgcagtaacttttttaaaaaattatcatttatattttact
gttaaagaaataacaacattaaaaggattttgtaaacttcgtcgtattttaaatatgttg
tctaatagttatattgatagtcgaatgcgccgttttcaatctttcggagattttagtatt
atgccaggacctcattttgccttaggtttttcgaaatatgcaacttggacttctcctatt
cgaaaatatagtgatatgattaatcatcgtctattgaaagcgattataaacaaagaaaaa
ccaattaaacctagtgaagacattaaattaaaaattagtgaacaaaaaagacgtaatcgt
atctctgaacgagacgtatcagattggctctataccatattattaaagaaaaagaaatac
gaaaataaaaaattcaaagctgaaattattgatattgctagaagtggaatgagagctaga
ttaatagaaaatggtgccaatgttttcattccaggagttttcttgcatcccattagagaa
gaattaatatttaatcaagaaataggtaaggtttttattaatggaatagttcaatataaa
gtatctgattacattgacgttactttatctgaaattcgacaagagacaagaagtattatt
gctaagcctgaaaattaa
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