Buchnera aphidicola USDA (Myzus persicae): BUMPUSDA_CDS00534
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Entry
BUMPUSDA_CDS00534 CDS
T03022
Symbol
rpod
Name
(GenBank) Rpod
KO
K03086
RNA polymerase primary sigma factor
Organism
bapu
Buchnera aphidicola USDA (Myzus persicae)
Pathway
bapu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bapu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BUMPUSDA_CDS00534 (rpod)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapu03021
]
BUMPUSDA_CDS00534 (rpod)
Transcription machinery [BR:
bapu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BUMPUSDA_CDS00534 (rpod)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
5_3_exonuc_N
Motif
Other DBs
NCBI-ProteinID:
AHG60309
UniProt:
W0P0P2
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All DBs
Position
complement(59323..61164)
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AA seq
613 aa
AA seq
DB search
MDQQNPQSQLKLLVTHGKEQGYLTYAEVNDHLPEEIIDSEQIDDIIQMINDMGIPVVEEA
PDADDLILNEINTDTDEDAVEAATQVLSSVESELGRTTDPVRMYMREMGTVELLTREGEI
DIAKRIEEGINQVQCSVSEYPEAITYLLEQYDRIKTGQIRLSDIITGFVDPNAEEIFSPT
AIHIGSELLDEEQSSEEDEENNQDDNEDDHSIDPELANEKFSELRIQYHNTNNTIKNKKR
THKDSLLEIYHLSEVFKQFRLVPKQFDHLVNNMRNMMERVRKQEKIIMKLCVEKCNMPKE
NFIKIFSGNEVNNSWFIKEQNKNQPWSKNLIKIKDSVLSSMQKLIEIEEETGLTIEQVKD
INKRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTP
EELSEKMLIPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEILRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaaaatccacaatcgcaactgaagctacttgttacgcatggtaaagaacaa
gggtatttaacctatgctgaagttaatgatcatttaccagaagaaattattgattctgaa
caaattgatgatattattcagatgattaatgatatgggaatcccagtcgttgaagaagca
cctgatgctgatgatttaattttaaatgaaataaatacagatacggatgaagatgcagtt
gaagcagcaacacaagtattatctagtgtagaatcagaactaggaagaactactgatcct
gttcgtatgtacatgcgagaaatgggaacagtagaattattaacacgagaaggagaaatt
gatatagcaaaacgtattgaagaaggtataaatcaagtacaatgttcagtatcagaatat
ccagaagctattacttatcttttagaacaatacgatcgtattaaaactggacagatacga
ttatctgatattataacaggtttcgtcgatccaaatgcagaagaaattttttctcctact
gctattcatataggttcagaactattagatgaggaacaaagttctgaagaagatgaagaa
aataatcaagatgataacgaagatgatcatagtattgatccagaactagctaatgaaaaa
ttttctgaattacgaatacaataccacaatacaaataatactattaaaaacaaaaaaaga
acacataaagattcgttattagaaatttatcatctttcagaagtttttaaacaatttaga
ttagttccaaaacaatttgatcatttggttaataatatgcgtaatatgatggaaagagtt
agaaaacaagaaaaaattattatgaaattatgtgttgaaaaatgcaatatgcctaaagaa
aattttataaaaattttttcaggaaatgaagttaataatagttggtttataaaagaacaa
aataaaaatcaaccatggtctaaaaatttaattaaaataaaagattctgttttaagcagt
atgcaaaaacttattgaaatagaagaagaaaccggcttaaccattgaacaagtaaaagat
attaataaaaggatgtctattggtgaagcgaaagctagacgtgcaaaaaaagagatggta
gaagctaatttaagattagtgatttctattgcaaaaaaatatacaaatagaggattgcaa
tttttagatttaattcaagaaggtaacattggtctcatgaaagcagtagataaatttgaa
tatcgtcgaggttataaattttctacatatgctacttggtggattcgacaagcaattact
agatctattgctgatcaagcacgtactattcgtattccagtacatatgattgagactatt
aataaattgaatcgaatttctagacaaatgttacaagaaataggtagagaacctactcca
gaagagctatctgaaaaaatgcttatacctgaagataaaattaggaaagtattaaaaata
gctaaagaaccaatatctatggagacacctgttggagacgacgatgattcacatttaggt
gattttattgaagataccaccttagaactacctctagattccgctacatctgaaagtttg
agatcagcaacacatgacgttttatcaggtctaactgcacgtgaagcaaaagtccttcgt
atgcgttttggaattgatatgaatactgatcatactttagaagaagttggaaaacaattt
gatgtaacacgagaaagaatacgtcaaatagaagcaaaagcacttagaaaactacgtcat
ccaagtagatcagaaatattgcgtagttttttagatgattaa
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