Buchnera aphidicola W106 (Myzus persicae): BUMPW106_CDS00313
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Entry
BUMPW106_CDS00313 CDS
T03023
Symbol
topa
Name
(GenBank) Topa
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bapw
Buchnera aphidicola W106 (Myzus persicae)
Brite
KEGG Orthology (KO) [BR:
bapw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bapw03032
]
BUMPW106_CDS00313 (topa)
03400 DNA repair and recombination proteins [BR:
bapw03400
]
BUMPW106_CDS00313 (topa)
Enzymes [BR:
bapw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BUMPW106_CDS00313 (topa)
DNA replication proteins [BR:
bapw03032
]
Prokaryotic type
DNA Topoisomerases
BUMPW106_CDS00313 (topa)
DNA repair and recombination proteins [BR:
bapw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BUMPW106_CDS00313 (topa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Toprim
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHG60678
LinkDB
All DBs
Position
310256..312823
Genome browser
AA seq
855 aa
AA seq
DB search
MQKSLVIVESPVKAKTINQYLGDEYIVKSSIGHVRDLPTSNLNNKQKIQNSKHSSKKNIL
IEKIGINPYQDWKAQYYILPGKEKIVTELKNIANQVDYIYLATDLDREGEAIAWHLKEVI
GGHPSKFRRVVFNEITQHSIEKAFNNVGYLNMNRVYAQQARRFMDRIVGYMISPLLWAKI
SRGLSAGRVQSVAVRIIADREKIIKNFIPEEYWQLSVSLFLKEKENITMNVTHFQNETFR
PVSKKEVDQAIKKIKKSLFTVKNREDKIFYKIAPAPFITSTLQQSSSLFLGFSVKKTMFL
AQKLYEKGYITYMRTDSYYLSEYAIETVRLYIKNYYGKSYLPKQPNLYSNQKYSQEAHEA
IRPCNVQIKLIKSEHLNSDAQKLYSLIWNRFVSSQMTPVKYQSITIIVIADQFKLQKKER
IVIFKGWTIVLKEENNICSEFLILDIGNLLLLNKITPIQKFTKPPPRFTEASLVRELEKK
GIGRPSTYASITSKIQDRGYVKIKKNKFYAEKMGEILTIRLKKSFSELIDYNFTANMEKK
LDQVAQNKIKWKTVLNSFFCNFSRQLEKAKKPPEEGGMELNLIVMTSINCPVCFKKMGIK
TAVTGVFLSCSGYVSEPKKRCKKTINLISLNECNLKQNNSKKDEFKKFINRCRKCNMIMD
SYLINPKLKIHICSNNPNCIGYTLEKGVFNSPTYLYETIKCDKCNDNMIFKIGRFGKFFI
CINELCKNTRKVLSNGEIAEPQFQPIPFPQLLCKESNAWFVLREGVTGIFFAANTFPKSR
ETRSPLVEELAQFQNLLPEKIRYLASGPQIDDEGNKTIVCFNRKTKEHYISSKKEGKFTS
WSAIFINKKWSIIKK
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatctcttgtgatagttgaatctccagtaaaagcaaaaactataaatcaatac
ttaggtgatgaatatatagttaaatctagcataggacacgtaagagatttacctactagt
aatttaaataataaacaaaaaattcagaattctaaacattctagcaaaaaaaacatttta
atagaaaaaataggtatcaatccttatcaagattggaaagctcaatattatattttacct
ggaaaagaaaaaatagttactgaattaaaaaatattgcaaatcaagttgattatatatat
ttagctacggatttagatagagaaggagaagcaatagcttggcatttaaaagaagttatt
ggtggtcatccatctaaatttagacgtgttgtatttaatgaaataacacaacattcaata
gaaaaagcttttaataatgttggttatttaaatatgaatcgagtatatgcccaacaagca
cgtcgttttatggatcgtattgtaggttatatgatctctcctttattgtgggcaaaaatt
tcaaggggtttatctgccggacgagttcaatcggtagcagttcgaattattgcagatcgt
gaaaaaattataaaaaactttataccagaagagtattggcaattaagtgtttctcttttt
ttaaaagaaaaagaaaatattactatgaatgtgactcattttcaaaatgaaacatttcgt
ccagtgagtaaaaaagaagtagatcaagcaataaaaaaaattaaaaaatcattatttact
gtcaaaaatcgtgaagataaaatattttacaagatagcacctgctccttttataacttct
actttgcaacaatcttctagtctatttttaggttttagtgtgaaaaaaacaatgttttta
gcacaaaaattatatgaaaaaggttatataacttatatgagaactgattcatattattta
agtgaatatgctattgaaactgttaggttatatataaaaaattattatggaaagagttat
ttacctaaacaacctaatctatattctaatcaaaaatattctcaagaagcacacgaagct
attcgaccttgtaatgttcaaataaaacttataaaatcagaacatttaaattctgacgcc
caaaaattgtattcattgatttggaatcgatttgtatcttctcaaatgacaccagtaaaa
tatcaatctattacaataatagtgatagctgatcaatttaaattacaaaaaaaagaaaga
atagtaatatttaaaggttggactatcgttttaaaagaagaaaataatatttgttctgaa
tttcttattctagatataggaaatttactattattaaataaaatcacacctattcaaaaa
tttacaaaacctcctccacgttttactgaagcatctttagtgcgtgagttagaaaaaaaa
ggtattggtagaccttctacttatgcttctattacatcaaaaatacaagatcgaggatat
gttaaaataaaaaaaaataagttttatgctgaaaaaatgggcgaaattctgactattcga
ctaaaaaaaagttttagtgaacttattgactataattttactgcaaatatggaaaaaaaa
cttgatcaagtcgctcaaaataaaattaaatggaagactgtactgaattcttttttctgt
aatttttcacgacaattagaaaaagcaaaaaaacctccagaagaaggaggaatggaacta
aatttaattgtgatgacttcaatcaattgtccagtttgttttaaaaaaatggggataaaa
acagcagttactggtgtttttcttagttgttcaggatatgtttctgaaccaaaaaaacga
tgtaaaaaaactataaatctaatttcattaaacgaatgtaatttaaaacaaaacaatagc
aaaaaagatgaatttaagaaattcattaatagatgccgaaaatgtaatatgattatggat
agttatttaattaatccaaaactaaaaatacacatttgttctaataatccaaattgtatt
ggttatactcttgaaaaaggagtttttaacagccctacttatttatatgaaacaattaaa
tgcgataaatgtaatgataatatgatttttaaaatagggcgttttggtaaattttttata
tgtattaatgaactttgtaaaaatacaagaaaagttttatctaatggtgaaatagcagaa
cctcaattccagccaattccatttccacaattattatgtaaagaatctaatgcttggttt
gttttacgagaaggtgttactggtatcttttttgctgctaatacttttccaaaatcaaga
gaaactaggtctccactcgtagaagaattagctcagtttcaaaatttattgccagaaaaa
atacgttatttagcaagtggacctcaaattgacgatgaaggcaataaaactatagtttgt
tttaatagaaagactaaagaacattatattagttctaaaaaagaaggaaaatttacaagt
tggtcagctatatttataaataagaagtggtctattattaaaaaataa
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