Bacillus velezensis CAU B946: BACAU_1651
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Entry
BACAU_1651 CDS
T01692
Symbol
ymdA
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
baq
Bacillus velezensis CAU B946
Pathway
baq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BACAU_1651 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baq03019
]
BACAU_1651 (ymdA)
Messenger RNA biogenesis [BR:
baq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BACAU_1651 (ymdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
CCF05185
LinkDB
All DBs
Position
1738065..1739624
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AA seq
519 aa
AA seq
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MTPMTVLISILLTLLGLVVGYYVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLE
AKDEIHTLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNE
RQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILDRVENELSHDIAIMTKETENR
AKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIRE
MGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLA
KRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND
LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaccccaatgacggttctcatctccattttgctgactctgctcggtttagttgttggc
tactatgttcgtaaaaccattgccgaagcaaagattgcgggcgcacgcggtgctgccgag
caaatccttgaagatgcaaagcgtgatgctgaagcactgaaaaaagaagctctgcttgaa
gcaaaggacgaaatccatacacttcgaatagatgctgaacaggaagttcgtgaaagacga
aatgagcttcaaaaacaagaaaaccgtttacttcaaaaagaagaaaatcttgaccgtaaa
catgaaggaattgataaacgggaagcgatgttggagaagaaagatcattctctgaatgaa
cgacaacaacatattgaagagatggaaagcaaagtggatgagatgattcgtatgcagcag
tcagaactcgaacgcatttcgagcctgacacgggatgaagcgaaacaaatcattcttgac
cgggttgaaaatgagctttcacatgacatcgccatcatgacaaaagaaaccgaaaaccgt
gcgaaagaagaggcagataaaaaggcgaaaaacattctgtcgcttgctttgcagcgctgt
gcagcagatcatgttgccgaaacgacggtatcggtcgtcaatcttccgaatgatgagatg
aaaggacgtatcatcggccgtgaagggcgtaatattcgtacgcttgaaacgcttacaggt
attgacctgattattgatgacacacctgaagcagtcattctttccggatttgatccgatc
agacgggagacggcaagaatcgctcttgataaactcgttcaggatggccgtattcatccg
gcgcgaattgaagaaatggttgaaaaatcccgccgtgaggttgatgactatatccgggaa
atgggtgagcagacgacgtttgaagtcggcgttcacggacttcacccggatctgatcaag
atcctcggccggttgaaattccgtacaagctacgggcagaacgtactgaaacattctatg
gaagttgcgtttttagccggtttaatggcttccgagcttggagaagatgcaaagcttgcc
aagcgggccggtcttctgcatgacatcggaaaagcaattgaccatgaagtggaaggaagc
cacgtggaaatcggagtggagcttgcgaccaaatataaagagcatccagtcgtcattaac
agtattgcgtcacaccatggagacgaagagccgacttccattatcgccgttctggtcgct
gccgctgatgcactgtcagccgcaagaccgggcgcgagaagtgaaacgctcgaaaactat
atccgcagacttgaaaagcttgaagaaatctccgagtcttacgaaggtgttgaaaaatca
tttgcgattcaggccggccgtgaagttcgcatcatggtgaagccggactccattaatgat
ttagaagcccatcgtttggcgcgtgatatccgtaaacgaattgaggacgagcttgattat
ccgggacacattaaagtgaccgtgatcagagaaactcgagccgtagagtatgcaaaataa
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