Bifidobacterium aquikefiricola: QN215_02305
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Entry
QN215_02305 CDS
T10738
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
baqk Bifidobacterium aquikefiricola
Brite
KEGG Orthology (KO) [BR:
baqk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baqk03032
]
QN215_02305 (topA)
03400 DNA repair and recombination proteins [BR:
baqk03400
]
QN215_02305 (topA)
Enzymes [BR:
baqk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
QN215_02305 (topA)
DNA replication proteins [BR:
baqk03032
]
Prokaryotic type
DNA Topoisomerases
QN215_02305 (topA)
DNA repair and recombination proteins [BR:
baqk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QN215_02305 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XDS44981
UniProt:
A0AB39U818
LinkDB
All DBs
Position
545281..548289
Genome browser
AA seq
1002 aa
AA seq
DB search
MATGSKLVIVESPTKAKKIGGYLGDGYTVMASVGHIRDLAQPSQVPSAEKSHFGKFGVDV
DDGFKPYYIVDGNKKKTVAELKSALKSADELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITRDAIRASLNKTRNVDDNMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMNFVRTAYWDVVAMLVPDDAQETSFPARLVELGNRRVAGSRDFDD
QGKPTEASRKDNALLVDEALANKLAEELKPADFTVTGLDTKPYRRRPQPPFTTSTLQQTA
GNRLSMSSRATMRAAQGLYENGYITYMRTDSVTLSQEAIEAARDDVRERYGKEYLSEHPK
QYTTKTAGAQEAHECIRPAGAHFRSPDELASLVPPDQLKLYTLIWRRTLASQMADATGST
ATVHMEAETQSQGLAHFQASGTVIDFLGFMKALGEGTGSHAHTSKSNETSKSERHHEESS
NVALPQLDRGDVLKAQDVTSDGHETQPPARYTEATLVKTLEAREIGRPSTYASIISTIID
RGYVYERGRALIPSWLAFSVIKLLESNFPQYVDYHFTAQMENGLDMIAHGKEKGKDWLTD
FYFGAGEHAAKTTSQIHEGLQKQVAQLGDIDARAINTIAIGDGLQVRVGRYGPYLEDTVN
TDEEGNPKRASLPETVAPDELTVEKGHELIATNAGGPRELGEDPETHGKVEVRKGRFGPY
VALTLPEDDETEHASGATKKTSARATSKTTKKTTRSKATKKAAASKPKMASLFKTMDPET
VSLDDALKLLRLPRTVGEVEESDDKTGEVYQATIMANNGRYGPYLTKSLPDGKSDTRSLG
SEDEIFTVDLDKAKELFAQPKYGNRRRGAAKPPLRELGPDPDNGKAVTIKDGFYGAYITD
GETNRTLPRQYTPESIEPAQAFALLAEKRAAGPSKRRSSRARGTRKKAPAKKTAAATSAA
KKTTAKKTATQRRSTASKRAATTAKTSGRAGKTSAASQMKEA
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccggcagcaagcttgtgattgttgagtcgccgaccaaagccaagaagataggc
ggctatcttggcgatggttataccgtcatggcatcagtgggtcatattcgtgatcttgcc
caaccatcacaggttccttcggcagagaaaagtcattttggaaagtttggcgttgatgtt
gacgacggcttcaagccgtattacatcgttgacggcaacaagaaaaaaaccgttgccgaa
ctgaaaagcgccttgaagtccgccgacgaactctatctcgcaactgatgaggatcgcgaa
ggagaggccatcgcctggcatcttgtgcagaccctgaaacctaaagttccggtaaagcgc
atggtgttccacgagattacgcgcgatgccatccgagcctcactaaacaagacgcgcaac
gttgacgacaacatggtcgatgcccaggagacacgtcgtgtgcttgacagactgtatggc
tacgagctgtcgccagtgctctggcgcaaggttgggccgggactgagtgccggccgtgtg
cagtcggtcgccactcgcttgatcgtcgagcgtgaacgggaacgcatgaatttcgtccgt
acggcatattgggatgttgtcgcaatgctggttcctgacgatgcgcaggaaacttcattc
ccggcccgtctggtagagctcggcaatcgtcgtgtggcgggttccagagacttcgacgat
caggggaagcccacggaggccagtcgcaaagacaatgcactgctcgttgatgaggcattg
gcaaacaagctcgcagaagagctcaagccagctgacttcacggtcaccggcctggacacg
aagccataccgtcgtcgcccacaaccgcctttcaccacctcaaccttgcaacagaccgca
ggcaatcgtctttccatgagttcgagagctacgatgcgagcggcacagggcctgtacgaa
aacggctacatcacctatatgagaaccgattcggtcaccctctcccaggaagccatcgaa
gctgcacgcgacgacgttcgcgagcgatatggcaaggaatatctttccgaacatccaaag
cagtacaccaccaaaaccgctggcgcacaggaagcccacgagtgcatccgtcctgcaggg
gctcatttcagatcgcctgatgaactggcatcgctggttcctcccgatcagctgaaactc
tatacgctgatctggcgtcggactctggcttcacagatggccgatgctacgggctccacg
gcaaccgttcacatggaggctgagacgcaaagtcagggactcgcccatttccaagcatcg
ggaacggttatcgacttccttggattcatgaaggctctcggcgagggtaccggctcgcac
gcgcacacaagcaaatcgaatgagactagcaagtcagagcgtcatcacgaagaatcctcg
aatgtggcgctgccacagttggaccgtggcgatgtgctgaaggctcaggacgtgacttcc
gacggacacgaaacgcagcccccggcgcgatataccgaggcaaccctggtcaagaccctg
gaggcaagggagatcggccgcccttcgacctatgcaagcatcatttccacgatcatcgat
agaggctacgtatatgaacgtggtcgggcgctgattccttcatggctggctttctcagtc
atcaagctcttggaaagcaatttcccgcagtatgtcgactaccatttcaccgcacagatg
gaaaacggactcgacatgattgcccacggcaaggaaaaaggcaaggattggcttaccgat
ttctactttggtgcaggcgagcatgcggcaaagaccacttcgcagattcatgaaggcttg
caaaagcaggtggcacagcttggagatatcgatgcgcgggcaatcaacacgattgccatc
ggcgatgggttgcaggtgcgtgtcggtcgctacggcccctatcttgaagacacggtgaac
accgatgaagagggcaatccgaaacgtgcctcgttgcctgaaacggtcgctcccgacgag
ttgaccgtagaaaagggacatgagctcatcgccacgaatgccggaggcccgcgtgagctt
ggcgaagatcctgagactcatggcaaggttgaggtgcgcaagggtcggttcggcccatat
gtcgcactgacgctgccagaagacgatgaaacggagcacgcatcaggtgcgaccaagaag
acctcggcacgggcaacttccaagacgacaaagaaaacgacacgttcaaaagcaacgaag
aaagcggccgcatccaagccgaagatggcatctctgttcaaaaccatggatcctgagacg
gtttctctcgatgatgctctgaaattgctcagactgcctcgtaccgtgggtgaagtcgaa
gaaagcgatgacaagaccggagaggtctatcaggctacgatcatggccaacaatggacgc
tatggtccgtatctcactaaatccctgcctgatggcaagagcgatacgcgttctctgggc
agtgaagatgaaatctttaccgtcgatcttgacaaggcgaaagagctgttcgcacagccc
aagtatggcaatcgcagacgcggagccgcaaagcccccactgcgcgagctcggaccagat
cccgacaatggcaaggccgtcaccatcaaggatgggttctatggcgcatacatcaccgat
ggagagacaaacaggacgttgcccaggcaatacacgccagagtcgatagagcctgctcag
gcatttgcactgctggctgaaaagcgtgctgcaggtccaagcaaacgacgaagctcaaga
gcgagaggaacacgcaaaaaggctcccgcaaagaagaccgcggccgcaacgtcagccgcg
aagaaaacaacagcaaagaaaactgctactcaacgaaggtcaaccgcatcaaagcgtgcg
gccaccacagcaaagacttctggcagggctggaaaaacttctgcagcaagtcaaatgaag
gaagcatga
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