Bifidobacterium aquikefiricola: QN215_08000
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Entry
QN215_08000 CDS
T10738
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
baqk Bifidobacterium aquikefiricola
Pathway
baqk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baqk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN215_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baqk03019
]
QN215_08000
03009 Ribosome biogenesis [BR:
baqk03009
]
QN215_08000
Enzymes [BR:
baqk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QN215_08000
Messenger RNA biogenesis [BR:
baqk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN215_08000
Ribosome biogenesis [BR:
baqk03009
]
Prokaryotic type
rRNA processing factors
QN215_08000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
XDS45585
UniProt:
A0AB39UA46
LinkDB
All DBs
Position
complement(1903850..1906849)
Genome browser
AA seq
999 aa
AA seq
DB search
MQHAARSIVPNSQEEGLGENKTLTNITNTTEQSAPTQRSEQPEQPRRRRVSRRVVRVAGA
ANAHVPVRVENQESEQQAPDTSTSVKNASAKSAPATSTAVKGRAEKHESAQREASHTPTR
TRRRTKRLDALEFESPATQSRKAAVDDNDIDSNKAVSKKDNAVERKSRAQEAVESLSTTA
SHHAPAAARPMTSLLFQEPVIPAETSRHNSSDVDGEADGQAEEPEDTTNSDRQNSDRRER
RSRRSREHNGSNRGNDDTHADEQDSQTASSSADEDEQEQGESRHRSRRSRHVQEDSQHES
RSKRTQRLNAQERRAAAEVEHIEEDLEYDEIHYAPIDEDEFRLSRASKRRRNRGARKDED
SRTENSRTENDRHGNGRDEDDNLRDHESEDSFRDKRHGRDDDYDEEDRDDEQLSGIRRRH
RHHSEGESDDDGSYETTGTRRRRRRRSTKSAESSRSEESASTPRRSRKQQYIDEITDIQG
STRLEAKRQRRRDNRRDRSRQMQLVEQDFLARRENVKREMVVREKEQHTQISVIEDDILV
EHYVSDIQEVATVGNVYIGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDTTRLEGQPR
RIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLTERERT
RLKSIVARIAPKDMGVIIRTAAENATEEAITKDLESLMKQWEIIDRKRKTTVILKKPKLL
QGEPDVAIRVVRDIFNDEFQSLIVQGDKVYERIEEYIDSMAPDLKSRLTKWEPADHQGAD
VFDTWHIDGQLRKGMERQVYLPSGGSLVIDRTEAMTTIDVNTGRYIGKGKSLEETVTRCN
LEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLKRLLECLARDRTKHQVAEVTSLG
LVQMTRKRVGQGLVEAFSEECPTCKGRGFILHDEPTISASYGDPYALKGGDPFVKTKHAH
HETQEQGGSGVSSPDVKAKLAKIAAAAQAASTEPESDEE
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatgccgcaaggagcatcgtgcccaattcgcaagaagagggtcttggcgagaac
aagaccctgaccaatatcactaatacaactgaacagtcagcaccaacgcagcgttcggaa
caacccgagcagccacgtcgccgcagagtcagcagacgcgtcgtccgcgttgccggagcc
gcaaatgcgcatgtgccggtccgtgtcgagaatcaggagtctgaacaacaggctccagac
acgagcacatccgtaaagaatgcatcggcaaagagcgctcctgcaacaagcactgccgtg
aagggcagagccgagaagcacgagtctgcacaacgcgaagcttcgcataccccgacgaga
acgcgtcggcgtaccaagcgtctggatgcgctcgaatttgagtcacctgccacacagagc
cgcaaggccgccgttgatgacaacgatatcgattcgaacaaggccgtatccaagaaggat
aacgccgtcgaaagaaagtcgagggcgcaagaggccgttgaatcgctgtcaaccactgca
tctcaccatgcgcccgcagcagctcgacccatgacatcactgctcttccaggaaccagtg
atccccgcagaaacatcaaggcacaatagctctgatgtcgatggggaagccgacgggcaa
gctgaagagcccgaagatacgacgaattctgacaggcagaattccgacaggcgcgaaaga
cggagcagacgctcgcgtgaacacaacggatccaatcgtggcaatgacgatacccatgct
gacgagcaggattcacaaacggcgtcatccagcgcagacgaggacgagcaggagcaaggc
gagtctcggcatagaagccgccgctcgcgccatgtgcaggaagacagccagcatgagtcg
cgcagcaagcgcacgcagcggctcaatgcccaggagcgtcgcgccgctgcagaggtcgag
cacatcgaagaggatcttgaatacgacgagattcactatgcgccaatcgacgaggacgaa
ttcagactatccagagcttcgaagcgtcgccgcaaccgtggcgctcgcaaggacgaagac
agccgcaccgagaacagtcgcacagagaacgatcgtcatggtaacggacgtgacgaggac
gacaacctacgcgatcatgagtcggaggattctttcagagacaagcgtcatgggcgtgat
gacgattatgacgaggaagatcgtgatgacgagcagctcagtggcatccgtcgccgccac
cgccaccatagcgaaggcgaatccgatgatgatggcagctatgaaaccacaggcacccgt
cgtcgtagaagaagacgttccaccaaatccgctgaatcgtcacgttccgaagagagcgct
tcgacgccaaggcgctctcgcaagcagcaatacattgacgagataaccgacattcaaggt
tccacgcgacttgaggcaaagcgccagcgccgtcgtgacaatcgtcgtgaccgaagccgc
cagatgcagctcgttgagcaggacttcctggcgcgtcgtgaaaacgtgaagcgtgagatg
gtggtccgcgaaaaggaacagcatacgcagatctcggtgattgaagacgatattctcgtt
gaacactacgtttcagacattcaggaggttgccacagtcggcaacgtctatatcggacgc
gtgcagaacgtcctgcccagcatggaagccgcattcgtcgatattgggcaggcacgaaac
ggcgtgctctatgcgggcgaagtgaattgggacaccaccaggttggaagggcagccgcgc
agaatcgagcttgccttcaaatcgggcgatcccgtgctcgtgcaggtcaccaaggatccg
attggacacaagggtgcacgcctgacttctcaggtgacgcttgcgggtagattcctcgtg
cttgtgccatcgggcggcatgactggcgtaagtcgcaagctgaccgagcgcgaacgcact
cggctgaagtctatcgttgccagaatcgcgccgaaggatatgggtgtgatcattcgtacc
gctgcagagaatgcgacggaagaggccatcaccaaggatcttgaaagccttatgaagcag
tgggaaatcattgatcgcaagcgcaagaccacggttatcctcaagaagccgaagctgctg
cagggtgagccggacgttgcgattcgcgtggtccgcgatatcttcaacgacgagttccaa
tcacttatcgttcaaggcgacaaggtctatgagcgcatcgaggaatacattgattcgatg
gctcctgacttgaagagtcgactgaccaaatgggaacctgccgaccatcagggtgccgat
gtcttcgacacatggcatatcgacgggcagctgcgcaagggcatggaacgtcaggtctat
ctcccttcaggcggttcgctcgtgatcgaccgtactgaggccatgacgacgatcgatgtg
aacaccggccgatacatcggcaagggcaagtcacttgaagagacggttacgcgctgcaat
cttgaggcatccgaagagatagcccgccaactgaggctgcgtgacatcggtggcatggtc
atgatcgactatgtggacatggtgatgccggcgaaccgtgatcttgtgctcaagcgtctg
cttgaatgccttgctcgagacagaacgaagcatcaggttgccgaggttacctccctcggt
cttgttcagatgacgcgaaagcgtgtcggacaggggctggtcgaggcgttctcggaggaa
tgcccgacttgcaagggtcgaggtttcatccttcatgacgagcccaccatttctgcatca
tatggcgatccctatgctcttaagggtggcgatcccttcgtcaagaccaagcatgctcac
catgagacccaggagcagggtggttcgggagtgtcatctcctgatgtgaaggcgaagctg
gcgaaaatcgccgctgccgctcaagccgcatccaccgagcctgagagcgacgaggaatag
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