Bartonella sp. A1379B: BA1379B_005630
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Entry
BA1379B_005630 CDS
T05185
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bara
Bartonella sp. A1379B
Pathway
bara03410
Base excision repair
bara03430
Mismatch repair
bara03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BA1379B_005630
03430 Mismatch repair
BA1379B_005630
03440 Homologous recombination
BA1379B_005630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bara03400
]
BA1379B_005630
DNA repair and recombination proteins [BR:
bara03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BA1379B_005630
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BA1379B_005630
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BA1379B_005630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
QRPTase_C
CDC45
Motif
Other DBs
NCBI-ProteinID:
AQX18392
LinkDB
All DBs
Position
complement(641910..643694)
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AA seq
594 aa
AA seq
DB search
MGRFRYLLNIQSSACNQAWIDALDMDRTNNARAISQKFGLPDQLARVLAARNVDESEAVV
FINPTLRALMPNPKKFTDMDCAAERLVRAIINQEKIAVFGDYDVDGACSAALLARFLHCF
GIIVKIYIPDRIIEGYGPNEQAMKGLVQEGASLIITVDCGANSPNAIRAARLAGADVIVL
DHHQMENIHEEAVALVNPNRPDDFSEQGHLCAAGVVFITLMWVNRLLREKKWKGALPDLL
SMLDLVALATICDVVPLQGVNRAFVVKGLQVARSMHNPGIAALAKVARIGEPLNSFHLGF
LLGPRINAGGRIGNQALGAYLLSCNDRDEADRIAQQLDQLNKERQEMEISQLAQAEAYID
SIYQERTIPSSFVIAHKGWHPGIIGILAARLKERFFCPVLIIALKEDGSGIGSGRSISGI
DLGALVHEAVALNLLEKGGGHSMAAGFTIQSDKIEAFREWLEEKISLIVSQLRAEKSLSI
DGFLSASGANKDLFDMIEKAGPFGSGNATPVFVFPSHRLVNLYEVGKGHLRLIISNIEGE
KLQGIAFGAVGTALGKFLSENIGKTIHLAGNLSLNHWRGNISPQLRVIDAAAVV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgggacgatttcgttatttacttaatattcaatcttctgcttgtaatcaagcttggatt
gatgcgcttgatatggataggactaataacgctcgtgccatttctcaaaagtttggttta
ccagaccagcttgctcgggttcttgcagcaagaaatgttgatgaatcagaagctgtggtt
tttattaatcctacactgcgcgctttaatgcctaatccaaaaaaatttacagatatggat
tgtgcagcagagcgtttagttagagctattataaaccaagaaaaaattgctgtttttggt
gattatgacgttgatggtgcttgttcagcagcgcttttagcacgttttttacattgtttt
ggtataatagtaaaaatctatattcctgatcgtattattgaagggtatggtccaaatgaa
caggcaatgaaaggattagtacaagaaggagcgagtttaattattacagttgattgtggt
gcgaatagtcccaatgctataagagcggcgaggcttgcgggtgctgatgttattgtttta
gatcatcatcaaatggaaaatattcatgaagaagcagttgcccttgttaatcctaatcgt
cctgatgatttttctgagcaaggacatttatgcgctgctggtgttgtatttattacatta
atgtgggttaatcgtttattgcgggagaaaaagtggaaaggggcgctacctgatctttta
agtatgcttgatcttgttgcattagctaccatatgtgatgttgttccattacaaggcgtt
aatcgtgcttttgtggttaaagggcttcaggtggctcgttctatgcataatcctggaata
gctgctttagcaaaagttgcacgtataggagaaccacttaatagttttcatttgggtttt
ttattggggcctaggattaatgcaggaggacgtataggaaatcaggccttaggggcatat
ttactcagctgtaacgatagagatgaggcagatagaatagcgcaacaactagaccaactt
aataaagaacgccaagaaatggagatatctcaattagctcaagccgaagcttatattgat
tccatttatcaagaaaggacaataccatcatcatttgtaattgctcataaaggatggcat
ccgggtatcattggtattcttgcagcccgtttaaaagaacgttttttctgtcctgttttg
ataatagctttgaaggaagatggtagtggtattggatcaggtcgttcgattagtggtata
gatttgggagcgcttgtgcatgaagccgttgcactaaatttattagaaaagggtggggga
cacagtatggctgcaggatttacaattcaatcagacaaaattgaagcttttcgtgaatgg
ttagaagaaaaaatatctttaatagtttcgcaattacgtgccgagaagtctcttagtata
gatggttttctttctgcttctggtgctaataaagatctttttgatatgattgaaaaagct
ggtccttttggctcaggaaatgctacacctgtttttgtttttccttctcaccggttagtt
aatttatatgaagttggaaaaggccatttgcgtcttattatttctaatattgaaggcgaa
aaattgcaaggaatagcttttggtgcagtaggaacagctcttggtaagtttctttctgaa
aatattggtaaaacaattcatttagctggtaatcttagtttaaatcactggagaggaaat
atcagcccacaattgcgtgttattgatgcagctgcagtggtttga
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