Candidatus Bathyarchaeota archaeon BA2: AOA66_0564
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Entry
AOA66_0564 CDS
T04066
Symbol
rtcB_1
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
barb
Candidatus Bathyarchaeota archaeon BA2
Brite
KEGG Orthology (KO) [BR:
barb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
barb03016
]
AOA66_0564 (rtcB_1)
Enzymes [BR:
barb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AOA66_0564 (rtcB_1)
Transfer RNA biogenesis [BR:
barb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AOA66_0564 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
AOA66_0564 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
KPV63835
LinkDB
All DBs
AA seq
494 aa
AA seq
DB search
MEDEEEHRGRRVSVPLERIDKCSWRIPTKYKSGMRVPGIVFADESLLEKMKMDRTLEQCA
NVAHLPGIYKYSITLPDGHEGYGFPIGGVAATDYEEGVVSPGGVGYDINCGVRLLTTNMS
EADIRPNLAELAGTIFKNVPCGLGSRREDFRLTIHELDRLAVEGAKWITDRGLGWPEDIK
HCEEGGCMEVANPDKVSSNAKQRGLPQCGTLGSGNHFLEIQKVDKIYDPKVAKTFGINQE
GQITVMIHCGSRGFGHQICSDYLRVMERAVHKYKIALPDRELACAPGTGNEAEDYYQAMA
CAVNYAFANRQAITHWVRESFEQVFKKPAEEFGLGLVYDVAHNIAKIEEHKVNGQQTKVW
IHRKGATRSFPPGHMDVPADYRAAGQPVIIPGSMGTSSWLLVGTPKAMEVSFGSTAHGAG
RMMSRAAAKRRFWGGDVKNAMGQRGIVVRAASAVVLAEEADPAYKDVDEVVEVSDKVGIA
TRVVRLVPIGVVKG
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgaggaagaacacagagggcgccgagtatcggttccactcgaaagaattgac
aaatgcagctggcggatacccacaaaatacaagtccggcatgagggtgcccggcatagtt
ttcgctgacgaaagcctccttgaaaagatgaaaatggatcgaacccttgaacagtgcgcc
aacgtggcgcatctgcctggcatttataaatattctatcactttaccagacgggcacgaa
ggatatggattccccataggcggtgttgcagccacggactatgaagaaggtgttgtcagc
ccaggaggagtgggatacgacatcaactgtggcgtccgccttttaaccacaaacatgtct
gaagccgacattcgaccaaacctagcagaactcgccggcaccatcttcaaaaacgttccc
tgcggattaggaagccgccgcgaagactttcgcttaaccatacatgagcttgacagactg
gctgtggaaggcgcgaaatggatcacggatcgggggctgggctggcccgaagacatcaag
cactgtgaagaagggggttgtatggaggtggctaaccctgacaaggtttcaagcaacgcg
aagcaacgtggtctcccccaatgcggcaccctaggatcggggaaccacttcctcgaaatt
caaaaggttgacaaaatctacgaccctaaagtcgccaaaaccttcggcatcaaccaggag
ggacaaattacagtcatgattcactgcggctcacggggatttggacaccagatatgctcg
gactatcttcgcgttatggagcgagctgtccataagtataaaattgctctgccagatagg
gaactagcctgcgcacctggcaccggcaacgaagctgaagattactaccaagccatggcc
tgcgccgtcaactatgccttcgccaaccgtcaggcgatcacacactgggttcgcgaaagc
ttcgagcaggttttcaagaagccagccgaggagtttggcttgggcttagtctacgacgta
gctcataacatcgcaaaaattgaggaacacaaggtaaacggacaacaaaccaaagtttgg
attcacagaaagggcgcaactcgttcgtttccgccggggcacatggacgttccagccgac
tatagagctgctgggcagcctgtgattattcctgggagcatgggcaccagctcatggttg
ctggttggcacgcccaaagctatggaggtttcattcggctccacggctcacggggcaggt
cgtatgatgagtcgagcggctgcgaagagaagattctggggtggagacgtgaaaaatgct
atgggacagcgtggaatagttgttcgggctgcaagtgctgttgttctggctgaggaggct
gatccggcctacaaggatgtggatgaagtggtggaagtaagcgacaaagttggaattgca
actcgcgtagtgcggttggttccgataggggttgtaaaaggataa
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integrated database retrieval system
