Candidatus Bathyarchaeota archaeon BA1: AOA65_1064
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Entry
AOA65_1064 CDS
T04065
Name
(GenBank) putative snRNP Sm-like protein
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
barc
Candidatus Bathyarchaeota archaeon BA1
Pathway
barc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
barc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AOA65_1064
09123 Folding, sorting and degradation
03018 RNA degradation
AOA65_1064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barc03019
]
AOA65_1064
03041 Spliceosome [BR:
barc03041
]
AOA65_1064
Messenger RNA biogenesis [BR:
barc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AOA65_1064
mRNA degradation factors
5'-3' decay
Lsm complex
AOA65_1064
Spliceosome [BR:
barc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AOA65_1064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF6897
Hfq
Motif
Other DBs
NCBI-ProteinID:
KPV64178
LinkDB
All DBs
AA seq
80 aa
AA seq
DB search
MEPSKKPLNVLTKRLNTHVSIMLKSGVEYRGTMVRCDGYMNIILNGASEHVNDQITANYG
SVLVRGNNILYITIDIPRVK
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atggaacccagtaagaagcctttgaatgtgttgacgaaacgactgaacacccatgtttcc
atcatgttgaagagtggggttgagtataggggcactatggttcgatgtgacggttacatg
aacatcatcctcaatggggcgtcagagcacgtgaacgatcaaataaccgctaattatggg
agcgttctcgtacgtgggaacaacatcctatacatcaccattgacattccccgtgtaaaa
tga
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