KEGG   Candidatus Bathyarchaeota archaeon BA1: AOA65_1064
Entry
AOA65_1064        CDS       T04065                                 
Name
(GenBank) putative snRNP Sm-like protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
barc  Candidatus Bathyarchaeota archaeon BA1
Pathway
barc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:barc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AOA65_1064
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AOA65_1064
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:barc03019]
    AOA65_1064
   03041 Spliceosome [BR:barc03041]
    AOA65_1064
Messenger RNA biogenesis [BR:barc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AOA65_1064
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AOA65_1064
Spliceosome [BR:barc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AOA65_1064
SSDB
Motif
Pfam: LSM DUF6897 Hfq
Other DBs
NCBI-ProteinID: KPV64178
LinkDB
AA seq 80 aa
MEPSKKPLNVLTKRLNTHVSIMLKSGVEYRGTMVRCDGYMNIILNGASEHVNDQITANYG
SVLVRGNNILYITIDIPRVK
NT seq 243 nt   +upstreamnt  +downstreamnt
atggaacccagtaagaagcctttgaatgtgttgacgaaacgactgaacacccatgtttcc
atcatgttgaagagtggggttgagtataggggcactatggttcgatgtgacggttacatg
aacatcatcctcaatggggcgtcagagcacgtgaacgatcaaataaccgctaattatggg
agcgttctcgtacgtgggaacaacatcctatacatcaccattgacattccccgtgtaaaa
tga

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