Candidatus Bathyarchaeota archaeon BA1: AOA65_2314
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Entry
AOA65_2314 CDS
T04065
Symbol
rfcS_5
Name
(GenBank) Replication factor C small subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
barc
Candidatus Bathyarchaeota archaeon BA1
Brite
KEGG Orthology (KO) [BR:
barc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
barc03032
]
AOA65_2314 (rfcS_5)
03400 DNA repair and recombination proteins [BR:
barc03400
]
AOA65_2314 (rfcS_5)
Enzymes [BR:
barc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AOA65_2314 (rfcS_5)
DNA replication proteins [BR:
barc03032
]
Prokaryotic type
DNA Topoisomerases
AOA65_2314 (rfcS_5)
DNA repair and recombination proteins [BR:
barc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AOA65_2314 (rfcS_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Intein_splicing
LAGLIDADG_3
Toprim
Zn_ribbon_Top1
HTH_23
Sigma70_r4_2
Hom_end
Hint
Motif
Other DBs
NCBI-ProteinID:
KPV61497
UniProt:
A0A0P9EDX9
LinkDB
All DBs
AA seq
1747 aa
AA seq
DB search
MERYTLIITEKPDAAQRIAEALDNEGEPKRVEEMGVPYFLANRDRKLVVVPALGHLYTVV
HEVGGRNHYPVFNFKWAPRYVAEKGAKQIKTWIEVISKLAKNADAYIDACVSPDTIILTE
DSETLTIADLEKCWQHHRVLGFYEKTKSLSDFDIERYMKLNPKKIGRHVFKLTAESGRHI
CATDDHRFYTPRGWVPLNQLKSNDRVAVYPLRELTPLAYQEQTLITEEDIWTILNNLLSE
RSKRPHSRYRYNRQQYFEVMKLGKGGLTYRKISEETGLPLRTVRRWLGERKVPYTVKNPS
IEKLKKMGLLPLTTKHEKIDAIMRLLGGVFGDGCLYALKKKWYAKGAVFMCEISGGVEEV
ESDLRSLGFNFIREGRERIGFINGRRFRQKCKMVMCNSLSLWLLLYALGAPSGVKTDITY
EIPRWLLAAPPRLQREFLSTMLGGDLVMPRVSDVSPKSFSMPDIRFNKLESLVHNGRKLA
DQIATLLGNLGVTVSSISIKPAGVRRKDGAKTVCIRLMISNSRKNLHNLFHKVGIKYCTG
KKNLGLLIAEYQKLKLNQPIGKIPTFKKWVRNATFRLGNSGLVWERVQSIVSVQCSDVRD
ITVSKVHNFIANGFLTHNCDYDLEGSLIGYCILKYTCENKEGIAKRMKFSTLTKGELEKA
YGEPLPQLDFAMIEAGRTRHEMDWLYGVNLSRALTLAAGHWSGRYTTLSTGRVQGPTLRL
LVGREREIRSFVPTPYWVILAEFQIGGTVYDAKYEMGVIEKRAEADAIVGACVGKDGVIE
SIEVKRFEQAPPIPFDLGALQTEAYGLFGYTPRRTADIAERLYLGALISYPRTSVDYDEN
IFIIDEYGETHIVKIGNFVDSLLQRSLDVQVHGEHEILPLKWQFKTFVVDPHTFKVVVKP
ISAVIRHPVMYDLYEVRTRGGRAVRVTADHSLFTWHNGNLIPIPTKNLKVGDYIIVIKNV
QFNQSLSSISLIDEIIKQGIENHFTLVNWKNNKQLLQKSYQKGLIEGANYRFRNAIPLNI
ALKLVGAEDINAPRLRIRARSGKNEITLPLIMQMTPEIARLLGYFTSEGCSWYKQGNKSC
YEVALRQYNFIILKDMEKSALAVFGDDIKIDSSCTKIRVYGKTPLKILQIFNLGEDAMSK
RVPEVILSAPPNIIAEYLKAYFAGDGTVSKDTVEARTVSRELANGIVFLLLHLGIFATLE
RCSPSKVRQQWHYRIVISGTHNLARFYNFVGVIKESHKAKLEQKTQKINLVYPTRINSIP
KSALTDWSQLYNPKTTIHKTKHINLFQLQKIEDKIKVLENLLTPPQWRTRLKMILERTSL
VLKDAKSLLQSDIGLSEIVSIERVQSTRSYVYDISVDGYENFLGGLGCVLLHNSSQKLPP
VINYRAILHALGRETMYKDMASDLLAREELKPHEGKREDPAHPAIYPTGNLPERALNDPE
KRVWDLIVRRFMAVFGEPAIKQGVRVFIAINGHHFYLRGRQVLKEGWMRFYKPYIRTEEV
LLPPIKEGDIIQLKRIMREDKFTKPPPRCNPSSLLRKMEDIGIGTKATRADIIETLYDRR
YIMEERIMVTDLGFDVVDILRKYCPGVISVKLTRELEERMEQIQRNSEKRDNVLVEAVDR
LKPMLEGFKEREEMIGLALSNSIKKARMQERVVGSCPNCNTGQLMILYSRRTGKRFIGCT
NYFKGLCKTSFPLPQRGAVKPARKGCRACGWPIVQVRTRIRRPWMLCINPNCPLKEQRKL
AIGGSAQ
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggaaagatatacattgatcatcaccgagaagccggatgcggctcagcggatcgcggaa
gcccttgataatgagggagagcccaaaagggttgaggagatgggcgttccctatttcctc
gccaaccgagacagaaaactcgtggtggtcccagccctcggacatctatacaccgtagtt
catgaggttggaggaagaaaccactatccggtcttcaacttcaagtgggcacccagatat
gtggcagagaaaggcgccaaacaaatcaaaacatggattgaagttatctcgaaactagca
aaaaacgcagacgcctacatagatgcatgcgtaagccctgataccattatccttactgaa
gatagtgaaactctaacaatagctgatttagaaaaatgttggcaacatcatagggttttg
ggattttatgaaaaaactaagtccttgtctgattttgacattgaacgttacatgaaattg
aatcctaagaagattgggagacacgtgtttaagttaaccgctgaaagcgggcgccatata
tgcgccacggacgatcatcgattttacactcctaggggctgggtccctctaaaccaatta
aaatctaatgacagggtcgctgtgtaccctcttcgcgaactaactccactagcttatcaa
gaacaaactttgataacggaggaagatatttggaccattctcaataatttattgtcagag
cgaagtaagagaccgcatagcagataccgctataatcgccaacaatattttgaagtaatg
aaattagggaaaggagggttaacatacagaaaaatctcagaagaaactgggctgccctta
agaactgtgagacgctggcttggcgagagaaaagtaccatatacggtaaaaaatccgagt
atcgaaaaactcaaaaaaatggggttgcttcccctcactacgaaacatgaaaaaatcgac
gcgattatgaggttgctaggaggtgtttttggagatggttgtctttacgcccttaagaaa
aagtggtatgccaaaggcgctgttttcatgtgcgaaatatcaggtggagtagaggaagtt
gaaagtgatctcagatctcttggctttaactttatcagagaaggcagagaacggattggt
tttattaatgggaggagatttcggcaaaaatgtaaaatggttatgtgtaattctttatcg
ttgtggttattactttatgctctaggggcgccatcgggagtaaaaacagacatcacttat
gaaattccaagatggttgctcgctgctccaccaagattgcaacgagagttcttatcaaca
atgttaggtggggatctagtgatgcctcgtgtatcagatgtgtctccaaaatcgtttagt
atgccagatatccgctttaacaagttagaatcactggtacataatggtagaaagttagca
gaccagatcgccactttgttaggtaatcttggagttaccgtttcatctatatcaataaaa
cccgcgggagtacgacgtaaagatggtgccaaaactgtatgtatacgtcttatgatatct
aattcaagaaagaatctacataatctctttcataaggttggaatcaaatactgcactgga
aagaagaaccttgggctgctgattgctgaatatcaaaaactcaagctgaatcaaccaata
ggaaaaatccccacatttaagaaatgggtaagaaatgcaacgtttagattaggaaatagt
ggtctcgtatgggaaagagttcagtctatagtctccgttcaatgtagtgatgtgcgagac
attactgtttcaaaggtccacaattttatcgcaaatggatttttaacgcataactgcgac
tatgaccttgagggcagcctcattggttactgcatactgaagtacacatgtgagaataaa
gagggtatagcaaaacgcatgaagttctccactttaacgaagggtgagctggagaaagcc
tacggggagcccctcccccaacttgacttcgccatgatagaggctgggaggaccaggcat
gagatggattggctatacggcgtgaacctttcacgtgcattgacactggcggctggtcac
tggagtggaagatacacaaccctaagcaccgggagagttcagggcccaacgctgcggctt
ctggttggtagagagagggagatacgttccttcgtgcctacgccatactgggtcatattg
gctgagtttcagatagggggtactgtgtatgatgcaaagtatgaaatgggggtgatcgag
aagagggcggaggcggacgccattgtaggggcttgcgtggggaaggatggtgtaatcgaa
agtattgaggtgaagaggtttgagcaggcgcctccgatcccctttgatttaggagcttta
caaactgaggcatatgggttatttgggtacacccccaggcgcaccgcagacatcgccgag
cgcctatacctcggggccctgatctcctacccaagaactagtgtggattatgatgagaat
atatttatcatcgacgagtatggagaaacccacattgttaaaattggtaattttgttgat
tctttgcttcaacgttcgttggatgtacaagttcatggtgaacatgaaatacttccccta
aagtggcaattcaaaacttttgttgtcgatccccatacattcaaagttgtagtgaagcca
ataagtgctgtaattcgtcatccagttatgtatgatctctatgaagtaaggaccaggggt
ggccgcgctgttagagtaactgctgatcatagtctatttacatggcacaatggaaatttg
attccaatacccacaaagaatttgaaagtaggggattacattatagtaataaaaaacgtc
caatttaaccaatctttaagctcaattagtctcattgatgaaataattaagcaaggtatt
gaaaatcactttacgttggttaactggaaaaataataagcaactcctccaaaagtcatac
caaaaagggctaattgaaggtgctaattatcgctttagaaacgctatcccgctaaatatc
gctctgaagcttgtaggcgcagaagacattaacgcacctagactacgtattagagcgaga
agtggcaagaacgaaataacattgccattaataatgcaaatgacgccggagattgctaga
ctcttaggttactttacatcagagggatgttcatggtacaaacaagggaacaaaagttgt
tatgaggtcgctttaagacaatataactttatcattttgaaggatatggaaaaatcggcg
cttgcggtatttggcgatgatataaaaattgactcgtcatgcacgaaaattagagtttat
ggaaaaacgccattgaaaattttgcagatcttcaacttaggtgaagatgctatgagcaaa
cgtgttccagaagtaatcctctcagctccgccaaacattatagccgagtatttgaaagca
tattttgcaggcgatggcacagtcagtaaagacaccgtggaagcccgtactgtaagccgt
gagctggcaaatggaatcgtgtttttactactgcacctcggcatatttgctaccctcgaa
agatgctctccatcaaaagtaaggcaacaatggcattatcgcattgtaataagtggaacc
cataatctggcacgtttttataatttcgttggggtaataaaggaaagccataaggcaaag
cttgaacaaaaaactcaaaagataaatcttgtctatccaacccgtattaacagcattcct
aagtcagctttaacagactggtcacaattatataatccaaaaactaccatccataaaacg
aaacacatcaacttatttcaacttcagaaaattgaagacaaaataaaggtcctggaaaat
ctgctaactccaccgcaatggcgtacacgattgaaaatgatccttgaacgtacaagcctt
gttttaaaagatgcaaaatctcttcttcaaagcgacattggactgtcagaaattgtttcc
atagaaagagttcaatcaacaaggagttatgtttacgatatatcagtggatggatacgag
aactttttagggggcttaggatgcgtacttttgcataacagtagccaaaaactgccgcca
gtaatcaactaccgagcaatacttcacgcgttaggtcgggaaaccatgtataaagacatg
gcttcggatcttcttgcaagggaggaattgaaaccacacgaggggaaacgggaagatcct
gcgcatcccgcgatctatccgacgggcaacttgccggaaagagcgttaaacgaccctgaa
aagagggtatgggatctgattgttaggcgcttcatggcagttttcggcgaaccagcgatt
aagcagggcgtaagggttttcatagcgataaacggacatcatttctacttgcggggaagg
caggttttaaaagagggttggatgcgcttttacaagccatacatacgaactgaggaggtg
ttgttaccccctatcaaagagggggacatcattcagttaaagcgtataatgagagaggat
aaatttacaaaacccccgccacgctgcaacccaagcagccttcttaggaaaatggaggat
attggaatcggcacaaaggcgaccagggcggacatcatcgagaccctttatgacaggaga
tacatcatggaggagcgaatcatggtaaccgatctggggttcgatgtcgtggatattctt
cgcaaatactgcccaggggtgatctcagtaaagctcacccgagagcttgaggaaaggatg
gagcagatccaacgtaacagtgagaagagggataatgtgcttgtggaggctgttgatcgg
ctaaaacctatgctggaggggtttaaggagagggaggaaatgattggtctcgcgttaagt
aactccatcaaaaaggctcggatgcaagagcgagtcgtcggcagctgcccaaactgcaac
actggtcaattgatgattctatactcacgaaggacagggaagcgttttattggctgcacc
aactactttaagggcctttgcaaaacctcattcccccttccccaacgaggagccgtgaag
ccagcccgaaagggctgtcgtgcctgtggatggccaatagtgcaggtgcggactaggatc
agaagaccttggatgttgtgcattaaccccaattgcccattaaaggagcaaaggaaactg
gcaattggtgggagtgcccaataa
DBGET
integrated database retrieval system
