Bradyrhizobium arachidis: WN72_27465
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Entry
WN72_27465 CDS
T06898
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
barh
Bradyrhizobium arachidis
Pathway
barh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
barh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WN72_27465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barh03019
]
WN72_27465
Messenger RNA biogenesis [BR:
barh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WN72_27465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QOZ69641
UniProt:
A0AAE7TJ57
LinkDB
All DBs
Position
complement(5747903..5749573)
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AA seq
556 aa
AA seq
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MARPDELVFAPLGGVGEIGMNLSIYGLGNRHQRAWLAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKCAAERNAPEI
PVTVIPSGGRVDVGPFNVEFIPVAHSIPEAHALAIHTEAGTVLHTGDWKIDPTPTLGRPT
DEKRLRELGEEGVLALIGDSTNAVRDGRSPSEAEVARTIIDLVKAAKGRVAVTTFASNVA
RIKAVADAAKAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPEVYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEVLT
DRDHLVHVSGHPRRDELRDMISWVKPQLLIPVHGEALHLNEHAKLARAAGVPRVLVVRNG
DLVKLGPGDPGVVGEVPSGRLYKDGTILEDSKSRAVIERRRMAFSGCAFVAIAMTEQGEL
ADDPEVDLVGIPEKNRAGEAFDDIVFDAVMSTIEGLPRARRRDPDALGESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggcccgacgaactggtgtttgcgccgctcggcggtgtcggcgagatcggcatg
aacctgtcgatctacggcctcggcaaccgccaccagcgcgcctggctggcggtcgatctc
ggcgtctccttcggcgacgaggagcatctgccgggcatcgacctgattatgcccgacatc
agcttcctggagaaggaacgcaagaacctgatgggcctggtgctgacccatgcccacgag
gaccatttcggcgccatcatcgacctctggccgaagctgaaatgcccgatctacgcgacg
cagttcagcgccgcgctgttcgaggccaaatgcgccgccgagcgcaatgcgccggagatc
ccggtcaccgtgatcccatccggcggccgcgtcgacgtcggcccgttcaacgtcgagttc
atccccgtcgcgcattccattcccgaagcgcacgcgctggcgatccacaccgaggcaggc
acggtgctgcataccggcgactggaagatcgacccgaccccgacgctgggacgtcccacc
gacgagaagcggctgcgggagctcggcgaggagggcgtgctcgccttgatcggcgattcc
accaacgccgtgcgcgacggccgctcgccttccgaagccgaggtcgcccggaccatcata
gacctggtgaaagccgccaagggccgcgtcgcggtgacgacctttgcctccaatgtcgcc
cgcatcaaagctgtcgccgatgctgcgaaagccgccgaccgcgaggtcgtcgtggtcggc
cgcgccatggagcgcgtggtgcaggtcgcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgaggtctacggccatctgccgcaggacaaggtgctggcgctctgc
accggcagccagggcgagccgcgcgccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcacgctgaaccgcggcgacagcgtgatcttctcctcgcgcaccattcccggcaac
gagaaggcggtcggctcgatcatcaacaatctggtgctccagggcgtcgaggtcctcacc
gaccgcgaccatctggtccacgtctccggccacccgcgccgagacgagctgcgcgacatg
atctcctgggtgaagccgcagctgctgatccccgtccatggcgaggccctgcacctgaac
gagcacgccaagctcgcgcgcgccgccggcgtgccgcgcgtcctggtcgtccgcaatggc
gacctcgtcaagctcggcccgggcgatcccggcgtggtcggcgaggtgccgtcgggccgt
ctctacaaggacggcacgatcctggaggactccaagtcccgcgccgtgatcgagcgacgc
cgcatggcgttctccggctgcgccttcgtcgccatcgccatgaccgagcagggcgagctc
gccgacgatcccgaggtcgatctggtcggcatccccgagaagaacagggccggcgaggcc
tttgacgacatcgtcttcgacgccgtgatgtccaccatcgagggcctgccgcgggcgcgc
cggcgcgatccggacgcgctgggtgaatcggtgcgccgcgccgtccgtgccgtgatcaac
gaacattggggcaaaaagcccccctgtctggtacatgtcctgacagtgtag
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