Burkholderia arboris: NLX30_05660
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Entry
NLX30_05660 CDS
T08608
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bari
Burkholderia arboris
Pathway
bari03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLX30_05660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bari03019
]
NLX30_05660
03009 Ribosome biogenesis [BR:
bari03009
]
NLX30_05660
Enzymes [BR:
bari01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NLX30_05660
Messenger RNA biogenesis [BR:
bari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NLX30_05660
Ribosome biogenesis [BR:
bari03009
]
Prokaryotic type
rRNA processing factors
NLX30_05660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTV55869
LinkDB
All DBs
Position
complement(1174940..1178131)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPVAAASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARPAR
ERTEKTEQRGGDRNRNRRGGTQQAQGGRDQAAAGRGQPQRQEREGKEVREPREGREPREG
REPREGRELREGREPREGRENREGREGRGPREGREPREGREPREGREPRESREPRESREP
RESREPRENREPRERAEQPEGVEAGGRGERQERGERRERRKPTQHAATLETVTRGENHPE
AEDDKAVAEALPDAELAADTEAGARDGEERRRRRRGRRGGRREREEDGAIVDQAEQGADD
EAAVQTVTQAAPAAAEPAHTAAPAVVAAVASAVVVEAVVEQHAAPVAVEAQPAPAHAEAA
PAAPAEPAVAVQAAEPAPAVAESGPAPVAVSPTDAFEVPAVPAAAPAAVEAPQSAPVEQA
APAATTEAAPVAVEPAPVEAAPVEAVAAPAPAPAQSAAAPASASLDVVLEQAGLVWVNTD
ADKFAAAQEAASQLPRAARVPRERKTLPPADTAPMQQVETTHH
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgttacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgtcaggaactgcgtgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagcggcatcgcaaagcggc
aatgccggccagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaacgaaatccacgatcag
gcccgcgcattcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgccgacatcgaggaaacggcaacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgtgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggaactgtcgcgccagcgcctgcgtccggccctgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcaccggccacatccgcgacaccgaatcgtccgca
ctgcaggttctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgcg
tcgtggaagatggccgaggaagccgctcgcgaactcgagtcggaaaccggctacagcaag
cgcgccgcagaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggccccgagcccggcaccgcagcgcccggtcgaaccggttgccgcgcccgcccctgtc
gccgcggcaagcggcggcttcatcggctggctgaagggcctgttcggcgtgtcgccggca
ccggcgcccgcaccggttgctccggcaccggcgaaggagcaggcagcccgcccggcccgc
gagcggaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgtcgcggcggc
acgcagcaggcgcaaggcggccgcgaccaggcagcggcaggccgtggccagccgcaacgc
caggagcgcgaaggcaaggaagtgcgcgagccgcgtgaaggccgcgagccgcgtgaaggc
cgcgagccgcgcgagggtcgtgaactgcgtgaaggccgtgaaccgcgtgaaggtcgcgaa
aaccgcgaaggtcgtgagggccgtggcccgcgcgaaggtcgcgaaccgcgcgaaggccgc
gagccgcgcgaaggccgtgagccgcgtgaaagccgtgagccgcgtgaaagccgtgagccg
cgtgaaagccgtgagccgcgcgaaaaccgcgagccgcgcgagcgtgccgagcagccggaa
ggcgtcgaggcaggcggccgtggcgagcgccaggaacgcggcgagcgtcgcgagcgccgc
aagccgactcagcatgcggccacgctcgaaaccgtcacccgtggcgaaaaccacccggaa
gcggaagacgacaaggccgttgcagaggccctgcccgacgccgagctggcagccgatacg
gaagccggcgcgcgtgacggcgaagaacgccgccgccgccgccgcggccgccgcggcggt
cgtcgcgagcgcgaggaagacggcgcaatcgtcgaccaggccgagcaaggcgcggatgac
gaagccgccgtgcaaaccgtgacgcaggcagcaccggctgccgccgaaccggcccacacg
gccgcaccggcagtcgtcgcagccgtggcaagcgccgtcgtcgtggaagccgtcgtcgag
cagcatgctgccccggtcgcggtcgaagcccagccggcaccggcacacgccgaagccgct
ccggccgccccggccgagcccgccgtcgctgtccaggcagcagaaccggcaccggccgtc
gcggaaagcggcccggcaccggtcgcggtttcgccgaccgacgcgttcgaagtgccggca
gtcccggcggcggccccggccgctgtcgaggcgccgcaatccgcacccgtcgagcaagcc
gcaccggccgcgacgaccgaagccgctccggtggctgtcgagccggcaccggtcgaagct
gcaccggtcgaggctgtcgcagcaccggcaccggctcccgcgcaatcggcagccgcgccc
gcttcggcgagcctggatgtcgtgctggagcaagccggcctcgtctgggtgaacacggac
gccgacaagttcgcagctgcgcaggaagccgcgtcgcaacttccgcgcgcagcccgcgtg
ccgcgcgaacgcaagacgctgccgccggccgatacggccccgatgcagcaggtcgaaacg
acgcatcactaa
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