Burkholderia arboris: NLX30_12580
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Entry
NLX30_12580 CDS
T08608
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bari
Burkholderia arboris
Brite
KEGG Orthology (KO) [BR:
bari00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bari03019
]
NLX30_12580 (hrpA)
Enzymes [BR:
bari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NLX30_12580 (hrpA)
Messenger RNA biogenesis [BR:
bari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NLX30_12580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
NACHT
nSTAND3
T2SSE
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UTV53710
LinkDB
All DBs
Position
complement(2606187..2610404)
Genome browser
AA seq
1405 aa
AA seq
DB search
MSNVSKSPAPTRANTPSARHPEGAADAREQQGQPPRQQHEKPAGTPAHAPRGPRSDERRG
DARPPAAKGASEPTGERPPRRERPPRAVVAPNPVPPITYPESLPVSGKRDEIARAIAGHQ
VVIVCGETGSGKTTQLPKICLDLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPF
GEVVGYKVRFTDNLAPGASVKLMTDGILLAETQADPLLKAYDTLIIDEAHERSLNIDFLL
GYLKEILPRRPDLKLIVTSATIDADRFARHFGTDERPAPVIEVSGRLYPVEMRYRPVAED
RPAVKNAEGTAGRDRVKTAREAERDLMDAIVDAVDELCREGSGDVLVFLPGEREIREAAE
ALRKHHPPHTEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGL
ARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGVCIRLYEESDYQARARFTDPEI
LRSSLASVILRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGREL
ARLPLDPRVGRMILAARDQQSLREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERS
EFLQWLKIWAWFEEAVAHKKSNRQLIDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRL
NEVEATYEQVHLALLTGLLGNLGLKADDDPHYLGARGIKFYLWPGSVLAKKAGRWVMAAE
LVETSRLYARCLAKIEPEWVEKIGAHLLKKSLSEPHWEKRPAQVSAYERATLYGLPIYHR
RRVAFGKQDPARARELFIRGALVEGEFDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDD
ELIYAYYDQAIPEGIHTGVAFERWYRDEAKKGGHAEDKQRLLYLSRDDLMRHEAAGVTTE
LFPKRATMAGVEMALTYHFEPGTPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKVQLL
LKSLPQKLRRHCVPLPEYAAGFVERMGRERFGAGGLVEALIADVRGETQIAMKTADFKLE
TLPAHLFMNFKVVDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASTIATGGEADAGQ
PAGQAPAVAAPAGAAGAAGRHAKAGKGAAPQTAAPSEGGATALYENLTTWNFGKLPELLE
IRRRGQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLP
GLREMAMQYMSLGTQDELRDQLIDTALDRACLQDPLPDDDASFHARRDEGRSRLNLLAQE
IARLVGQVLAEYAGLVKKLAQAKPFAQAHADLQQQLAALVGKRFVIDTPYTQLAHFPRYL
KGIALRIDKLKADPARDAKQSADLLPLAQQYQRAVSQRGGVADPRLAEFRWLLEELRISL
FAQELRTPMPVSVKRLHKVWESMQR
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtttctaaaagtcccgcgccgacgcgggccaatacgccgtcggcccggcac
ccggagggtgcggccgatgcacgcgagcagcagggccagccgccgcgccagcagcacgaa
aagccggcgggcacgccggcacacgcgccgcgcgggccgcgcagcgacgaacggcgcggc
gatgcgcgcccgcctgccgcgaagggcgcatccgagccaacgggcgagcgcccgccacgc
cgcgagcgtccgccgcgcgccgtcgtcgcgccgaatcccgttccgccgatcacgtacccc
gaaagcctgcccgtgtcgggcaagcgcgacgaaatcgcgcgcgcgatcgccggtcatcag
gttgtcatcgtctgcggcgagaccggctcgggcaagaccacccagttgccgaagatctgt
ctggacctcggccgcggcctcggcgccggcggcaccggcctgatcggccatacgcagccg
cgccggctcgccgcgtcgtcgaccggccgccggatcgccgaggagctcggcacgccgttc
ggcgaggtggtcggctacaaggtgcgttttaccgacaatctcgcgccgggcgcgtccgtg
aagctgatgacggacggcatcctgctcgccgagacgcaggccgacccgctgctgaaggcg
tacgacacgttgatcatcgacgaggcgcacgaacgcagcctgaacatcgacttcctgctc
ggctacctgaaggaaatcctgccacggcggccggacctgaagctgatcgtcacgtccgcg
acgatcgacgccgatcgcttcgcgcgccatttcggcaccgacgagcgcccggcgcccgtg
atcgaggtgagcgggcggctgtatccggtcgagatgcgctaccgcccggtggccgaggat
cgcccggccgtgaagaacgccgaaggcacggcgggccgcgaccgcgtgaagaccgcgcgc
gaggccgagcgcgacctgatggacgcgatcgtcgacgcggtcgacgagctgtgccgcgaa
ggctccggcgacgtgctggtgttcctgcccggcgagcgcgagattcgcgaggcggccgag
gcgctgcgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctctcg
gcggccgaccaggacaaggtattcaaggcgtcgaatgcgcgccggatcgtgctcgcgacc
aacgtggccgaaacgtcgctgacggtgccgggcatccgctatgtggtcgacacgggcctg
gcgcgcgtgaagcgctattcgtaccggaacaaggtcgagcaactgcaggtcgagtcgatc
tcgcaggccgccgcgaaccagcgcgcgggccgttgcggccgcgtggccgacggcgtctgc
atccgcttgtacgaggaaagcgactaccaggcgcgggcgcgcttcaccgatccggaaatc
ctgcgctcgtcgcttgcgtcggtgatcctgcggatgaagtcgctgcacctgacggcgatc
gaatcgttcccgttcctcgagccgccgcccggccgcgcgatcgcggacggctatcaactg
ctcaatgaactcggcgcggtcgacgacgacaacgcgctgacgccgctcggccgcgaactc
gcgcggctgccgctcgatccgcgcgtcggccggatgattctcgccgcgcgcgaccagcag
tcgctgcgcgaagtgctgatcatcgcgagcgcgctgtccgtgcaggacccgcgcgaccgc
ccgatcgaggcgcaggagcaggctgaccaggcgcaccgccggtttgccgacgagcgttcc
gaattcctgcagtggctgaagatctgggcgtggttcgaagaggccgtcgcgcacaagaag
tcgaatcgacagctcattgacgcgtgccggcagaacttcctgtcgcacctgcggctgcgc
gagtggcgcgacgtccactcgcagctgctgaccgtcgtgcgcgagcacggctggcgcctg
aacgaagtcgaggcgacttatgaacaggtccatctggccctgttgacgggcctgctcggc
aaccttggcctgaaagccgacgacgatccgcactatcttggcgcgcgcgggatcaagttc
tacctgtggccgggctccgtgctcgcgaagaaggccggccgctgggtgatggcggccgaa
ctcgtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagcccgaatgggtc
gagaagatcggcgcgcacctgctgaagaaatcgctgtccgagccgcactgggaaaagcgt
ccggcgcaggtcagcgcatacgagcgcgcgacgctgtacgggctgccgatctaccaccgc
cggcgcgtcgcgttcggcaagcaggatccggcgcgggcgcgcgagctgttcatccgcggc
gcgctggtcgagggcgagttcgacacgaaactgccgttcttcgcgcacaaccgcaagctg
ctcgccgacatcgagcagctcgagcacaagtcgcgccgccaggacgtgctggtcgacgac
gagctgatctacgcgtactacgaccaggcgatcccggaagggatccacacgggcgtcgcg
ttcgagcgctggtatcgcgacgaagcgaagaagggcggccacgcggaggacaagcaacgg
ctgctgtacctgtcgcgcgacgacctgatgcgtcacgaggcggccggcgtgacgaccgag
ctgttcccgaaacgcgcgacgatggccggcgtcgagatggcgctcacgtaccacttcgag
cccggcacgccgcgcgacggcgtgacgctcgcggtgccgttgtatgcgctgaaccaggtc
gacgcgcgccgctgcgagtggctcgtgccggggatgttgaaggaaaaggtgcagttgctg
ctgaagtcgctgccgcagaagctgcgccggcactgcgtgccgctgcccgaatatgcggcc
ggcttcgtcgagcggatggggcgcgagcgcttcggcgcgggcgggctcgtcgaggcgctg
atcgccgacgtgcgcggcgagacgcagatcgcgatgaagacggccgacttcaagctcgag
acgctgcccgcgcacctgttcatgaacttcaaggtggtcgacgagcacggccgccagctg
gcgatggggcgcaatctcgcgcaactgcgccaggagctcggcgcgcaggcgcagcagcag
ttccagaagatcgcggcggcgtcgacgatcgcgaccggcggcgaggccgacgcaggccag
ccggccggccaggcgccggcggtggctgccccggcaggcgctgccggcgctgctggccgc
cacgcgaaggcgggcaagggcgcggcgccgcagacggccgctccgtcggaaggcggcgca
acggcgctgtacgagaacctgacgacgtggaatttcggcaagctgcccgagctgctggaa
atccgccggcgcggccagacgctgtacggctatccggcgctcgtcgaccgcggcacgcat
tgcgacgtcgaagtgttcgattcgccggaggaggccgcgcgcatccaccgggccggcctg
cggcggctgttcgcgctgcagttgaaggagccgatcaagttcctcgagaagaacctgccg
ggcctgcgcgagatggcgatgcagtacatgtcgctcggcactcaggacgagctgcgcgac
cagctgatcgacacggcgctcgaccgcgcgtgcctgcaggacccgctgcccgacgacgac
gcgagcttccacgcgcgccgcgacgagggccggagccgcctgaacctgctcgcgcaggaa
atcgcgcggctggtcggccaggtcctggccgaatacgcggggctcgtgaagaagctcgcg
caggcgaagccgttcgcgcaggcgcacgcagacctgcagcagcagctcgccgcgctggtc
ggcaagcgcttcgtgatcgacacgccttacacgcaactggcgcacttcccgcgctacctg
aagggcatcgcgttgcggatcgacaagctgaaggccgatccggcgcgtgacgcgaagcag
tcggccgacctgctgccgctcgcccagcagtatcagcgcgcggtgtcgcagcgcggcggc
gtcgccgacccgcggctcgcggaattccgctggctgctcgaggaactgcggatttcgctg
ttcgcgcaggaactgcgcacgccgatgcctgtctctgtcaagcgtctgcacaaggtctgg
gagtcgatgcagcgctag
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