Burkholderia arboris: NLX30_15540
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Entry
NLX30_15540 CDS
T08608
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bari
Burkholderia arboris
Pathway
bari03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLX30_15540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bari03019
]
NLX30_15540
Enzymes [BR:
bari01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLX30_15540
Messenger RNA biogenesis [BR:
bari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLX30_15540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
DegT_DnrJ_EryC1
Sacchrp_dh_NADP
MerR-DNA-bind
Cas3-like_C_2
CARD_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UTV54274
LinkDB
All DBs
Position
3220315..3221766
Genome browser
AA seq
483 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
ERQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHSVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPHAKPEPIQQRRGQQQPRGGGGGGGNRQPRAGGSGQPAAK
REGNAQPKTSQQKAAKPRTQGGAGAGGNSGGRPAGGGNGARPANGNAAHPNRNRSSRSGQ
RGH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggcgatccctgccgtcctcggcggcggcgac
ctgctcgccggcgcgcaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgcggacaatcgcggcgcgaagcgcgcggtgcgcgcactg
atcctcacgccgacgcgcgaactcgccgcacaggtcgaggaaagcgtccgggcatacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
gagcgccagaacctgctgttctcggccaccttctccgatgaaatcaaggcgctcgcggac
agcctgctcgattcgcccgcgctgatcgaagtcgcgcgccgcaacacgaccgccgaaagc
gtcgcgcagaagatccactcggtcgaccgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgtaccaagcacggcgcgaac
cggctcgccgaacagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgtacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccgcacgggccgcgca
ggcgcgaccggtgaagccgtgtcgctcgtgtgtgtcgacgaaaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgcacgcgaagccggagccgatccagcagcgccgcggccagcagcaaccgcgcggcggt
ggcggcggcggcggcaatcgccagccgcgtgcaggcggctcaggccagccggccgcgaaa
cgcgaaggcaacgcgcaaccgaagacgtcgcagcagaaggccgcgaagccgcgcacgcaa
ggcggtgccggcgccggcgggaatagcggcggacgtccggcgggtggcggcaacggcgca
cgtccggcgaacggcaatgccgcgcacccgaaccgcaaccgctcgtcgcgcagcggccag
cgcggtcactga
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