Burkholderia arboris: NLX30_16155
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Entry
NLX30_16155 CDS
T08608
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bari
Burkholderia arboris
Pathway
bari02020
Two-component system
bari02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bari00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NLX30_16155
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NLX30_16155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bari03021
]
NLX30_16155
Transcription machinery [BR:
bari03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NLX30_16155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
TRF
Motif
Other DBs
NCBI-ProteinID:
UTV54395
LinkDB
All DBs
Position
3353805..3355310
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AA seq
501 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRV
AADGSLIAQTPPGQHNEPASTNGSSTSGDRAERDEPAGADEYDSYGSGDGNDGPQWNLDE
FGRASGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQASPRDRALVMFLIESLDDDGYLT
ATLDEVLADLPPELEIDCDELNAALALLHSFDPPGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPD
IIVKKAGQGWLAELNPEVMPRLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQ
RFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPFG
TLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagccttcaactccgcctgtcgcaacatctggcgctgacgccgcagctgcag
cagtcgatccggctcctgcagttgtcgacgctcgaattgcagcaggaagtcgcgatggcc
gtcgcgcaaaacccgttgctcgagaacgacgacgaatggatcgcgagcccgctgcgcgtc
gcggcggacggatcgttgatcgcgcagacgccccccgggcagcataacgagccggcctcg
acgaacggcagcagcacgtccggcgatcgcgcagagcgcgacgagccggctggcgccgac
gaatacgacagttacgggtccggcgacggcaacgacggcccgcaatggaatctcgatgaa
ttcggccgcgcgagcggcgcgtccgacgacgacgacctcccgccgctgcaggtgcaggaa
gccgcgacgtcgctgcgcgaccacctgtccgcgcaattgcgcgtcacgcaggccagcccg
cgcgatcgcgcgctcgtgatgttcctgatcgagtcgctcgacgacgacggctacctgacc
gcgacgctcgacgaagtgctcgccgacctgccgcccgagctggagatcgactgcgacgag
ctgaacgcggcgctcgcgctgctgcacagcttcgacccgcccggcgtcggcgcacgctcg
gcgtcggaatgcctgaagctgcagttgctgcgcctcgatccgtccccgacgcgcacgctc
gcgctcgagatcgtgtcgcagcacctcgaactgctcgcggcccgcgatttcacgcggttg
cgcaagcacctgaaggcaagcgacgacgcgctgcgcgacgcgcatgcgctgatccgctcg
ctggagccgttccccggcgccgcgtacggcaaggccgaggccgactacgtcgtgcccgac
atcatcgtgaagaaggccggccagggatggctcgcggagctcaatccggaggtcatgccg
cgcctgcggatcaacaacctgtacgcaaacatcctgcgcaacagccgcggcgatccgtcg
gccggttcgctgaagcagcagctccaggaagcacggtggctgatcaagaatatccagcag
cgtttcgacacgatcctgcgtgtcgcgcaggctattgtcgagcgtcagaagaatttcttt
gcgcacggtgaaattgccatgcgccccttggttttgcgggaaatagctgatacgctgggc
ctacacgagtcgactgtcagccgtgtgacaaccgggaagtacatgctgaccccgttcggg
acgcttgaatttaagtacttcttcggatctcacgtttcgaccgacaccggtggcgccgcc
tcgtcgaccgccatccgagccctcatcaagcaactgataggagctgaagacccaaaatcg
ccactttcggacagccgcattgccgagctgctggcagaacagggtttcgtggtcgcacgc
cgcacggttgcgaaatatcgcgaagccctcaaaatcccggcagtgaatctgcgcaagtct
ctttag
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