Bartonella sp. JB63: BJB63x_005830
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Entry
BJB63x_005830 CDS
T05552
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
barj
Bartonella sp. JB63
Pathway
barj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
barj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJB63x_005830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
barj03400
]
BJB63x_005830
Enzymes [BR:
barj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJB63x_005830
DNA repair and recombination proteins [BR:
barj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJB63x_005830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF7102
Motif
Other DBs
NCBI-ProteinID:
AQX29270
UniProt:
A0AAC9W0X2
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All DBs
Position
657282..660782
Genome browser
AA seq
1166 aa
AA seq
DB search
MTILKKIIIPKNTHGYMIFDGVVDGFEAFALTKLSAEIAQNKPLVYVVRDGTKIAYLQQV
LNFIEPKLPVLQFPAWDCLPYDRVSPGLAITARRLSALAYMSDLRKNPRSAIILTTANTI
IQKLPPCTMIDDQIIHARVGQCMDITHLIQYLERNGFEQVATVRDIGEYAVRGGIIDIFP
PSYIEPLRLDFFGHTLETIRVFDSATQRTIANKTELFLQPISEITLTPELISRFKSNYIR
AFGVPKKDDMLYESVSQGRRFSGMEHWLPFFYENLNSFFDHCGNLPVVFENLIEEVLIER
YRLIKDYYSARRERKSNQENNVSYHPIEPNLLYWTPEQVLTFIEQSGQRIDFTPFNISQT
VEQTIIHANTTQGYNFIKERNTPDKNVFSSVVDYIASLRSAGKKVLLAFWSEGSMDRLLQ
VLDEHGLQKVEIAKSLQIVKITPRDRILAAVLMIEHGFEIEDFVIIAEQDILGDRLIRSS
KRRKNNANFISEIASLNSGDLVVHIDHGIGQFIGLKTITTTGILRDCLEINYAGSDRLFL
PVENIELLSRYGSENTNVTLDKLGSVGWQTRKARLKKHLLKIANQLICIAAERTTRSAPV
LIPPVGLFDEFVACFPYEETNDQIDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHHKTFMARFQGLPVKIAHLSRLVKAKELAQVKKGISKG
TIDIVIGTHALLNDSVNFSRLGLLIIDEEQHFGVKHKERLKGLKGDIHVLTLSATPIPRT
LSLALSGLRELSLITTPPIDRMAVRTFISPFDVMVIRETLLREYYRGGQSFYVCPRISDL
SYVEEYLKTHVPELKFVIAHGQMPAGQLDDIMNAFYDGQFDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLIPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVTELKDGEHKIDNQWSPQIS
LGTTVIIPESFVPDLSLRMALYRRLTELNKLEQIDEFGAELIDRFGPLPLEVQHLLKVFY
IKILCRKAHVEKLDAGPKGIVIQFRNNYFENGIALIQWVEKQGSMAKIRPDQSIVLIRDW
TTINERLIGAVTIMTQLTEMVTEHTV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgactatattaaaaaaaattattattccaaaaaatacgcatggttatatgatttttgat
ggtgttgttgatggatttgaagcttttgcactaactaaattaagtgcagaaattgctcaa
aataaaccgcttgtttacgttgtccgtgatggaacgaaaatagcttatttacagcaagtt
ttaaattttattgaacctaagttacctgttcttcaatttcctgcatgggattgtttacct
tatgatcgcgtatcacctgggttagctattactgcgcgtcggctttcagctttggcttat
atgtcagatctgcgtaaaaatccacgatctgcaattatattaacaacagcgaatacaatt
attcaaaaactgccaccttgtacaatgattgatgatcaaattatccatgcacgtgttggt
caatgcatggatataacacatttgattcaatatttagaacgtaatggttttgaacaagtc
gcaactgtacgtgatattggtgaatatgctgtaagaggaggaattattgatatttttcct
cccagttatatagagcctttacgtcttgatttttttggccataccttagagacaattcgc
gtgtttgattcagctacacaaagaacaatagcgaacaaaacagaattatttttgcaacca
ataagtgaaattactctcactcctgaactcatcagccgatttaaaagcaattatattcgt
gcttttggtgtacctaaaaaagatgacatgctttatgaatctgtttcccaagggaggcgt
ttttcaggtatggagcattggctcccatttttttatgaaaatcttaatagcttttttgat
cactgtggtaatttacctgttgtttttgagaatctcatagaagaagttcttattgaacgt
tatcgtcttatcaaagattattatagtgctcgcagagaacgcaaaagtaatcaagaaaat
aatgtttcttaccatccaatagagcctaatcttctttattggacaccagaacaagtttta
acatttatagaacagtctggtcagcgtattgattttacaccttttaatatttcacaaaca
gttgaacaaacaattattcatgcgaataccacacaaggctataattttataaaagaacgt
aatactccagataaaaatgttttttcaagtgtggttgattatattgcctcattgcgatct
gctggtaaaaaagtacttttggctttttggagtgaaggatctatggatcgcttgctgcaa
gttcttgatgaacacgggttacaaaaagtagaaattgcaaagtccttacagattgtaaaa
ataacaccacgtgatcgtatcttagctgctgttctaatgatagagcatggttttgaaatt
gaagattttgttattatagcagaacaagatatccttggtgatcgactaataagatcgtca
aaaaggcgcaagaataatgccaactttatttctgaaattgcttcattaaattctggtgat
ctcgttgtacatattgatcatggtattggacagtttattggtcttaaaactatcacgaca
actggaattttacgtgattgtttagaaatcaactatgctggaagcgatcggctattttta
cccgttgaaaatattgaacttctatcccgttatggatcagaaaatacgaatgtaacgttg
gataaattagggagtgttggttggcaaacacgtaaagcacgtcttaaaaagcatttgttg
aaaattgctaatcaactaatctgtatagctgcagaacgcactacacgttctgcacctgtt
ttaatcccgccagtaggcctttttgatgaatttgttgcatgttttccttatgaagaaacg
aatgatcaaatagatgcaattgatgctgttttagatgatttagcatcaggaaaaccaatg
gatcgtttaatatgcggtgatgttggctttggtaaaacagaagttgctattcgaagtgct
tttgttgcagcattaaatggttatcaagttgctgttgttgtgcctacaactttgctttca
cgacaacatcacaagacctttatggcgcgttttcaagggttgccagttaagattgctcat
ttgtcaaggcttgtaaaagcgaaagaattagcacaagttaaaaaaggtatttcaaaaggt
acgattgacattgttattggaacgcatgcattactcaatgactcagtcaatttttcacgg
ttagggcttcttatcattgatgaagaacagcactttggagtaaaacataaagagcgtcta
aaagggctaaaaggtgatattcatgttcttacactttcagctactcctataccaagaact
ttaagccttgctttatcaggactacgtgaactttcattaatcacgactccacctattgat
agaatggctgtacgtacttttatctcgccttttgatgtaatggttatacgcgaaacatta
ttgcgcgaatattatcgaggtggacaaagtttttatgtttgtcctcgtatttctgatctt
tcttatgtagaagaatatctcaaaacacatgtgcctgaacttaaatttgttatagcacat
ggacaaatgccagctggacaacttgatgatattatgaatgcattttatgatggacaattt
gatgtattactttcaaccactatcattgaatcaggtcttgatatcccgacagctaataca
ttaattgtgcatcgtgctgaaatgtttggcctttctgcgctatatcagttacgtggtaga
gtagggcgttcaaaacaacgcgcttatgcgctttttacttttccttctggtaaagtttta
attcctgcagcagatcgtcgtcttaaagttttgcaatctcttgatacattaggtgcaggt
tttcaactagctagtcatgatatggatattcgaggttcaggaaatttattgggtgaagaa
caatcaggacacattaaagaagttggatttgaactctatcaaaaaatgcttgaagaagct
gttactgaattaaaagatggtgaacataaaatcgataatcagtggtcacctcaaatttct
cttggtacaacagtgatcataccagaaagttttgtccctgatttatcattacgtatggcg
ctctatcgtcgtttgacagagcttaataagctagaacaaattgatgaatttggagctgaa
ttaattgaccgctttggtcccttaccactcgaagttcaacacttacttaaagtcttttat
atcaaaatattatgtcgaaaagcacatgtggaaaaattagatgctggaccaaaagggatt
gttatacagtttcgcaataattactttgaaaatggtattgctcttattcaatgggttgaa
aaacaaggctctatggcaaaaattcgacccgatcaaagcattgtccttattcgtgattgg
actacaataaatgaaagacttattggtgcagtaactattatgacacaacttacagaaatg
gtaacagaacatactgtttag
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