Babylonia areolata (ivory shell): 143276028
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Entry
143276028 CDS
T11321
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
barl Babylonia areolata (ivory shell)
Pathway
barl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
barl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143276028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barl03019
]
143276028
03041 Spliceosome [BR:
barl03041
]
143276028
Messenger RNA biogenesis [BR:
barl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
143276028
Spliceosome [BR:
barl03041
]
Complex B
Other components
Prp19-related factors
143276028
Complex C
143276028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_8
TPR_15
NRDE-2
ARM_TT21
ARM_TT21_C
TPR_2
Motif
Other DBs
NCBI-GeneID:
143276028
NCBI-ProteinID:
XP_076436528
LinkDB
All DBs
Position
31:11101052..11152863
Genome browser
AA seq
857 aa
AA seq
DB search
MPVSQVDNATDIFFEEEDIAYEEDILRNPYSVKCWLRYIDFKKEAPKEVINTIYERALKQ
LPGSYKLWYNYLKIVRKQIRGRCVTDPVYEDANSAFERALVFMHKMPRIWIDYVQFLMDQ
GKITRTRRTFDRALRALPVTQHNRIWPIYLKFVRLYDLPETAVRVYRRHLKLQKENTEEY
IDYLVSIDWLDEAAIRLADVINDETFVSKEGKSKHQLWNELCKLIAENPDKVTSLKIEPI
IRQGLKRYTDQIAALWNSLADYYVRGAHMERARDIYEEAIQTVITVRDFTQVFDAYAQFE
KSSIASKMEAMEDKGATEEDDLELELRLARLESLMDRRPLLLNSVLLRQNPHNVHEWHKR
VKLFEGKPQEIINTYTEAVQTVDPMQASGRPHTLWVEFAKFYEQADQIEDARLIFSKAVQ
VEYKHVDDLASVWCEWSEMELRHDKSDEALKLMQKATTPPPRKVAYHDETEKVQARVHKS
LKVWSLYADLEESFGTFKTCKAVYDRILELRIATPQIIMNYGMFLEENNYFEEAFKAYEK
GIALFKWPNVFDIWNTYLTKFIDRYGGSKLERARDLFEQCLDGCPDKFAKAIFLLYAKLE
EEHGLARHAMGVYDRATKAVLPEEQNEMYNIYIKRAAEIYGITHTRSIYEKAIEVLPNEQ
AREMCVRFADLERKLGEIDRARAIYAHGSQMADPRVAHQFWEAWKEFEINHGNEDTVREM
LRIKRSVQATYNTQVNYMSAQMIAASSAKKDDTATPETGAESGMEQLEAKARKLAEESLQ
EKAAAEKKLLFVRSTTTDEELGELTKTHNPEEIDIDDDSDDEEEVEEMELRQQPVPTKVF
GDLADKAKQDDDDDDDD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgccagtttcacaagtggataacgctacagacatattttttgaagaggaagatatagcc
tatgaggaagacattctcagaaatccgtactccgtcaagtgctggctgcggtatatcgac
ttcaagaaggaagctcctaaagaggtcatcaacaccatctatgagcgtgccttgaaacag
cttcctggcagttacaagctgtggtacaactacctgaagatagtgaggaagcaaattcgg
ggtcgctgcgtcacagacccagtgtatgaggatgccaacagtgccttcgaaagagcgctc
gtcttcatgcataagatgcctcgaatctggatcgactacgtccagttcctgatggaccag
gggaagatcacccggacgcggcgcacctttgaccgcgctctgcgtgccctccccgtcacc
cagcacaaccgcatctggcccatctacctgaagtttgtcagactctacgacctccctgaa
acagccgtcagggtctatcggaggcatctcaagcttcagaaggagaacacagaggagtac
attgattacctcgtttccattgactggttggatgaggctgccattcgtctagctgatgtc
attaatgacgagactttcgtgtcaaaagaaggaaaatcgaaacaccagctgtggaacgag
ctgtgcaagctgatcgcggagaacccagacaaggtgacgtcgctgaagatcgagccgatc
atccgtcagggcctgaaacgctacacggatcagatcgcggcgctgtggaactccctggcg
gattactacgtccgtggggcacacatggaaagggcaagagacatctacgaggaggccatc
cagacggtgatcaccgtgcgcgacttcacccaggtgtttgacgcctacgcccagtttgag
aagagcagcatcgcgtccaagatggaggccatggaggacaaaggggccacagaagaagat
gacttggaactggagctacgactggcgcgtctggaatctttgatggatcgtcggccattg
ttgctaaacagtgtgttgctgcgacagaacccacacaacgtccacgagtggcacaagaga
gtcaagctgtttgaggggaagccacaggagatcatcaacacgtacacagaggccgtacag
acagtggatcccatgcaggcctcaggtcggccacacacactgtgggtggagttcgccaag
ttctatgagcaggccgaccagattgaagacgcgaggttgatcttcagcaaggcggttcag
gtggagtacaagcacgtggacgacctggcctctgtgtggtgtgagtggtcagagatggaa
cttcgccacgataaaagcgatgaggctctgaagctgatgcagaaagcaacaacaccccca
ccccgtaaagtggcgtaccatgatgagacggagaaggttcaggcccgtgtgcacaagtcg
ctcaaggtttggtcactgtatgcagacttggaagaaagctttggcacgtttaagacctgc
aaggcggtgtatgatcgcattctggagctccgcatcgccacgccccagatcatcatgaat
tacgggatgtttctggaggagaacaactacttcgaggaggctttcaaggcctatgaaaaa
gggattgctctgttcaagtggccgaatgtctttgacatttggaacacctacctgaccaag
ttcatcgacagatatggcgggagtaagctggaacgtgccagggacctgtttgaacagtgc
ttggatggctgtcctgataaattcgccaaagccattttcctgctgtacgccaaactggag
gaggagcatggtctggctcgacacgccatgggggtgtacgaccgcgccaccaaggctgtg
ctgcctgaagagcagaacgagatgtacaacatttacatcaaacgagcagcagagatctac
ggcataacgcacacgcgttccatctacgagaaagccatcgaggtgttacccaacgaacaa
gctcgagagatgtgcgtccgctttgctgacttggaacggaagctgggtgagattgaccgt
gcccgggccatatacgcccacggctcccagatggctgatcccagggtggcccatcagttc
tgggaggcgtggaaggagtttgaaatcaaccacggcaacgaggacacggtgcgcgaaatg
ctgcgcatcaagcgaagcgtgcaggccacctacaacactcaggtgaactacatgtcagca
cagatgatcgctgccagctctgccaagaaggacgacactgcgacacctgagacaggggca
gagtccggcatggaacagctggaggccaaggcacggaaactggcggaggagtctctgcag
gagaaggcggcggctgaaaagaagctgctgtttgtcaggagcacgacgacagacgaggag
cttggggagctgaccaagactcacaaccctgaagagatcgacatcgatgatgacagcgat
gatgaggaggaagtggaggaaatggagttacgtcaacagcctgtacccaccaaagtgttt
ggcgatctggcggacaaggccaagcaagatgacgacgatgatgacgacgactga
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