Babylonia areolata (ivory shell): 143276162
Help
Entry
143276162 CDS
T11321
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
barl Babylonia areolata (ivory shell)
Pathway
barl03013
Nucleocytoplasmic transport
barl03015
mRNA surveillance pathway
barl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
barl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143276162
09122 Translation
03013 Nucleocytoplasmic transport
143276162
03015 mRNA surveillance pathway
143276162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barl03019
]
143276162
03041 Spliceosome [BR:
barl03041
]
143276162
Enzymes [BR:
barl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143276162
Messenger RNA biogenesis [BR:
barl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143276162
Spliceosome [BR:
barl03041
]
Complex C
Other components
EJC/TREX
143276162
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143276162
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
143276162
NCBI-ProteinID:
XP_076436698
LinkDB
All DBs
Position
31:complement(30891931..30907775)
Genome browser
AA seq
427 aa
AA seq
DB search
MADDTAEENILDYEDEENETAVDGAAGDGQVKKDVKGTYVSIHSSGFRDFLLKPELLRAI
IDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPKDGEVSVLVMA
HTRELAFQISKEYERFSKYMNNVKIAVFFGGMPVKKDEEVLQKNCPHIVVGTPGRLHALA
NAKTLSLKNIKHFILDECDKMLSDLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPICK
KFMQDPMEVYVDDDSKLTLHGLQQHYCKLKDNEKNRKLFELLDVLEFNQVIIFVKSVPRC
MALAQLLLEQNFPAIAIHRQMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEKDAKILNDVQERFEVNITELPDEIDI
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgacacagcggaagaaaacatcttggattatgaggacgaggaaaatgagaca
gcagttgatggggctgctggtgatggccaggtgaaaaaggatgtgaagggaacatacgtg
tccatccacagttcaggtttcagagactttttgctcaaacctgaacttctgcgtgccatc
attgactgtggctttgaacatccttcagaagttcagcacgaatgtattccacaagccatc
ttgtcaatggatgtgctatgccaagccaagtctggcatggggaaaaccgcagtgtttgtt
ctggccacactgcaacaactggagcctaaagatggagaggtgtctgtgctggtaatggca
cacacacgcgagctggccttccagatcagcaaggagtacgagcggttcagcaagtacatg
aacaatgtgaagatagcagtgttctttgggggcatgcctgtgaagaaggacgaggaggtg
ctgcagaagaactgtccccacatcgtggtgggcactcctggacgtctccacgccctagct
aacgccaagaccctgtccctgaaaaacatcaagcacttcattctggacgagtgtgacaag
atgctgtctgacctcgacatgcgtcgtgacgtacaagagattttccgcttgacaccgcat
gagaaacaagtgatgatgttcagcgccaccctcagcaaggaaattcgcccaatctgcaag
aagttcatgcaagatcccatggaggtgtatgtggacgacgactccaaactgacccttcat
ggactgcagcaacactactgtaaactgaaggacaacgagaagaaccgcaagctgttcgag
ctcctagacgtcttagagtttaaccaggtgatcatcttcgtgaagagtgttccccgctgc
atggccctggcacagctgttgttggaacagaacttcccagccatcgccatccacagacaa
atgacgcaggaagagaggttatctcggtaccagcagttcaaggacttccagaaacgaatc
cttgtggccaccaatctgtttggtcgtgggatggacattgagagagtcaacatcgtcttc
aactatgatatgcctgaggactctgatacctacctgcacagggttgcccgtgctggtcgg
tttggcaccaagggtctggccatcacctttgtgtctgatgagaaagatgccaagatcctc
aatgacgtgcaggagcgctttgaggtcaatatcacagaactgcctgatgagattgacatc
tcctcttacattgaaggccggtaa
DBGET
integrated database retrieval system
