Babylonia areolata (ivory shell): 143282162
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Entry
143282162 CDS
T11321
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
barl Babylonia areolata (ivory shell)
Pathway
barl03013
Nucleocytoplasmic transport
barl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
barl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143282162
03015 mRNA surveillance pathway
143282162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barl03019
]
143282162
Enzymes [BR:
barl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143282162
5.6.2.5 RNA 5'-3' helicase
143282162
Messenger RNA biogenesis [BR:
barl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
143282162
mRNA cycle factors
Common to processing body (P body) and stress granule
143282162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
SRP54
UvrD-helicase
AAA_16
ATPase
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
143282162
NCBI-ProteinID:
XP_076443828
LinkDB
All DBs
Position
5:52345124..52379291
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEDGADLLGADTQGSEFDYTDFTLPSQTQSQTQASQVELQSQS
QVNGPETPAQNGVDLSINPIAQGVGELNFEEEEEDQFFMKDLPKYACSYCGIHDPNCVVY
CNASKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRHPCATLSNLKDMNWDPNQWQPLIQDRQFLSWLVKVPSDQDQMRSRQ
ISAQQINKLEELWKENPEASLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADY
DKKLKEAQTQDNMSVRWDVGLNKKRIAYFHMPKANDEMKLMHGDELRIRYVGELHKPWSG
VGHVIKIPDNYSDEVAIELKSNAGVPSECTHSFVVDFVWKSTSFDRMQAAMKTFAVDETS
VWGYIYHKLLGHEVEDVVLKCTLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLVKQNTGPALVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSVPELSKLQQLKDETGELSSTDEKRYRALKKQCEKELLQAADVICCT
CVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERLRKNLD
FPWPQPDKPMFFYCTNGQEEIASSGTSYLNRTEAANAEKLVTRFLRSGVLPEQIGIITPY
EGQRAYQVQYMQYSGSLNKKLYLEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLTNLKESLIQFSKP
RKLVNSTNPGGRFMSNTMFDARELLVPGSVYDRGMPYREPVVHTHDQLNFIGPERAYTRS
AMNLPVPVNMFLPPAPQAFFNQHMPPVSKKGKMRRKAAAVCVADAGMQKGMPGMAGGNSW
NQNRRQKPPRYSRHQQPPAQMNSGPSQPSQQSQEVSQGFSQGPLTQGLSMSQAFQMSQPG
MSGLSQAELSQDSFMADDFKSQMDGMLSQDSTYQGDRHFIASQLSQGPFN
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatatggtcccagctctcaaacacttaccttcctggaaaccgaagat
ggggccgaccttttgggcgccgatacacaaggctcagagttcgattacacagacttcacc
ctgccttcacaaacccagtctcagactcaagcatcacaggttgaacttcagagtcaaagt
caggtgaatggaccagaaacacctgcacaaaatggagttgacttatcaatcaacccgatc
gcacagggtgtgggggagctcaactttgaagaggaggaggaggatcagttcttcatgaaa
gatttacccaaatatgcatgctcatattgtggcatccatgaccccaactgtgttgtgtac
tgcaacgcttccaaaaaatggttctgtaatggacgtgggaatacatcaggaagtcacatc
atcaaccacctggtgcgtgccaaggccaaggaggtgacactacacaaggacggccccctg
ggagaaacagtgctggagtgttataactgtggctgtcgtaatgtcttcctgctgggcttc
atccctgccaaggcggactctgtggtggtgttactgtgccgtcacccatgtgccaccctg
tccaacctcaaggacatgaactgggacccgaaccagtggcagcctctgatccaggaccgt
cagttcctgtcgtggctggtcaaagtgccgtctgaccaggatcagatgcgcagtcgtcag
atctctgcccagcagatcaacaagctggaggagctgtggaaggagaatccagaagccagc
cttgaagaccttgaaaagcctggagtggatgaggaacctcagcaagtcctcctcagatat
gatgatgcctaccagtatcagaacatctttggccccctcgtgaagctggaggcagactac
gacaagaagctgaaggaggctcagacccaggacaacatgtccgtgcgctgggatgtgggt
ctgaacaaaaagcgcatcgcatactttcatatgccgaaagcaaatgatgaaatgaagctg
atgcatggagatgagctgaggatccgctacgtgggagagctgcacaagccatggtcgggc
gtggggcatgtcatcaagatccctgacaattacagcgatgaggtggccattgagctcaaa
agcaatgctggggtgccttcagagtgtactcacagttttgttgtcgattttgtttggaag
tccacctcttttgacaggatgcaggcagcaatgaagacgttcgctgtggatgagacctca
gtatggggctacatctaccacaagctgctgggccacgaggtggaggacgtggtgctcaag
tgcacactgcccaagaggttctccgcccctggcctgcccgagctcaaccactcccaggtc
tacgctgtcaagacagtgctccagagacccctcagcctcattcagggcccccctggcaca
ggaaaaacagtgacctcggccaccattgtatatcacctggtgaagcagaacacgggacct
gctttggtttgcgccccctccaacatcgcagtggaccagctgactgaaaagatccacaag
actggtctgaaggtggtgcggctgtgtgccaagagccgagaggccatcgactcccccgtg
tctttcctggctctgcacaaccagattcgcaacatggacagtgtccccgagctgtccaaa
ctgcagcagctgaaggacgagacaggagagctgtcctccacagacgagaaacggtacagg
gccctcaagaagcagtgtgagaaggagctgctgcaggctgctgacgtgatctgctgcacg
tgtgtgggggctggtgatcctcgcctggccaagatgcagttccgctctgtgctgattgat
gagagcacccaggctacagaacctgagtgcatgattcctgtcatcctgggatgtcgacag
ttaatccttgtgggggaccactgtcagctgggcccggtggtgatgtgcaagaaagcagcc
cgtgcgggcctgtcccagtcgctgtttgagcgcctggtggtgctggggatccgacccatc
cgcctgcaggtgcagtaccgcatgcaccccgccctctccgccttcccctccaacatcttc
tatgagggctctctgcagaacggcgtcactgcagctgaacgccttagaaagaacctggac
ttcccatggccccagccagacaagcccatgttcttctactgcactaatgggcaggaagag
attgccagctctggaacctcctacctcaacagaacggaggcagccaatgcagagaagctg
gtgactcgcttcctgcgatctggggtgctgccagagcagattgggatcatcaccccttac
gaggggcagcgcgcttaccaagttcagtacatgcagtactcgggatccctcaacaagaag
ctgtatctggaaattgaggtggccagtgttgacgccttccaaggccgtgagaaggacttt
atcatcttgtcctgcgttcgctcgaatgaacaccagggcatcggctttctgaatgaccct
cgacgtctgaatgtggctctgacacgagccagatatggaataatcatcgtaggaaacccc
aaggtcctgtccaagcaaccgctgtggaaccatctgctgacgtactacaaggagcagaag
tgcctggtggaggggcctttgaccaacctgaaggagagcctcatccagttcagcaaacca
cgcaagctggttaactccacaaaccctggcggacggttcatgagcaacaccatgtttgat
gcccgggagctgctggtgcctggcagtgtctatgatagaggcatgccataccgtgagcca
gtggtgcacacccacgaccagctgaacttcatcgggccggagcgtgcctacacccgcagc
gccatgaacctgccagtgcccgtcaacatgttcctgcccccggccccgcaggccttcttc
aaccagcacatgccacctgtaagcaagaaaggaaaaatgagaagaaaagcagcagcagtg
tgtgtggcagacgcaggcatgcagaaggggatgccaggaatggcaggaggcaacagctgg
aaccagaaccggcgccagaagccaccgcgctacagccgacaccagcagccacctgcccag
atgaactccgggccttcccagcccagtcagcagagccaggaggtgtcgcagggattctca
cagggcccactgacccagggcctgtccatgtcccaggccttccagatgagccaaccaggc
atgagtggactgtcccaggccgagctgtcccaggacagcttcatggcagacgacttcaag
tcccagatggatggtatgctgtcccaggactccacataccagggcgatcgtcacttcatc
gcctcacagctttctcagggcccctttaactag
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