Babylonia areolata (ivory shell): 143284631
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Entry
143284631 CDS
T11321
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
barl Babylonia areolata (ivory shell)
Brite
KEGG Orthology (KO) [BR:
barl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
barl03016
]
143284631
Enzymes [BR:
barl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
143284631
Transfer RNA biogenesis [BR:
barl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
143284631
Prokaryotic type
tRNA splicing ligases
143284631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
143284631
NCBI-ProteinID:
XP_076447613
LinkDB
All DBs
Position
8:19772883..19800768
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AA seq
504 aa
AA seq
DB search
MRTYNEEMKFLEKMNPFCWKIKKGFVDNMKVDGYFYVNDRLEKLMFDELKQSCHSKGFGG
FLPGMKQIANVAALPGIVSRSVGLPDVHSGYGFAIGNLAAFDMSDPKAVVSPGGVGFDIN
CGVRLLRTNLHEKDVLPVKEQLAQCLFDHIPVGVGSKGIIPMSAQNLEEALEMGMDWSLR
EGYAWAEDKEHCEEYGRMLNADPSRVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDEY
AAKKMGVEFPGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACAHINSV
EGQDYLKGMASAANYAWVNRSSMTFLARQAFAKMFKTTPDDLDMHMIYDVSHNIAKVEEH
YVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMVD
TFGTTCHGAGRALSRAKSRRNLDYTQVLAALEEKGISIRVASPKLVMEEAPESYKNVTDV
VDTCHAAGISKKCVKLRPVAVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaggacctacaatgaagaaatgaaattcctggagaagatgaacccattctgctggaag
atcaagaaaggctttgtggacaacatgaaagttgatggctatttctatgtgaatgaccgg
ctggagaagctgatgtttgatgaactgaagcagtcctgccacagcaaaggcttcggaggc
ttcctgcctgggatgaaacaaattgccaacgtggccgctctgcctggcattgtctcccgg
tctgttggcttgcctgatgtacattctggatatggttttgccattggtaacttggcagct
tttgacatgagtgaccccaaggcggtggtgtcaccgggaggtgttggctttgacatcaac
tgtggggtacgtctgctgcgaaccaacctgcacgagaaagacgtgctgcctgtcaaagaa
cagctggcacagtgtctctttgatcacattcctgtgggcgttgggtccaaaggaatcatc
cccatgtccgcacagaatctggaagaagccctagagatgggaatggactggtctctacgt
gaaggttatgcatgggcggaggacaaggagcactgtgaggagtacggccgcatgttgaac
gctgacccctccagggtttccagccgtgccaagaaacgagggctgccacagctgggaacg
ctaggagcaggaaaccactacgctgagatccaggtggtggacgagatctttgatgagtac
gctgccaagaaaatgggtgtggagtttcccgggcaggtgtgcgtcatgatccactgcggc
agtcgaggcctgggccatcaggtggcaacagatgcactggttgccatggagaaagcgatg
aagcgtgacaagattgacgtcaatgaccggcagttggcgtgtgcacatatcaactcggtg
gaaggacaggactacctgaagggcatggcgtccgctgcaaactatgcctgggtcaaccgt
tcatccatgactttcctggccagacaggcatttgccaagatgttcaagacaacgcccgac
gacctggacatgcacatgatctacgacgtgtcgcacaacatcgccaaggtggaagagcac
tatgtggatggccgacagaagacactgctggttcatcgtaaagggtccacccgcgccttc
cccccacaccatcccctcattcctgttgactaccagctgactggccagcctgtgctgatc
ggaggcaccatgggaacctgcagctacgtcctgaccggcaccgaacagggcatggttgac
acgtttggaacaacatgtcatggggcgggaagagctttgtcacgagccaagtctcgacgc
aacttggattacacccaggtgttagctgcccttgaggagaaaggaatcagcattagggtg
gcctcccctaagcttgtgatggaagaggctccagagtcctacaagaatgtgacagatgta
gttgatacctgccatgctgcggggatcagcaagaagtgtgtcaagcttcgccctgtggca
gtgatcaaggggtga
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