Babylonia areolata (ivory shell): 143295521
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Entry
143295521 CDS
T11321
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
barl Babylonia areolata (ivory shell)
Pathway
barl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
barl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143295521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barl03019
]
143295521
03041 Spliceosome [BR:
barl03041
]
143295521
03009 Ribosome biogenesis [BR:
barl03009
]
143295521
03016 Transfer RNA biogenesis [BR:
barl03016
]
143295521
Enzymes [BR:
barl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143295521
Messenger RNA biogenesis [BR:
barl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143295521
Spliceosome [BR:
barl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143295521
Complex C
U4/U6.U5 tri-SnRNP related factors
143295521
Ribosome biogenesis [BR:
barl03009
]
Eukaryotic type
Pre-60S particles
Helicases
143295521
Transfer RNA biogenesis [BR:
barl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143295521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
HTH_Tnp_1_2
Motif
Other DBs
NCBI-GeneID:
143295521
NCBI-ProteinID:
XP_076463366
LinkDB
All DBs
Position
20:complement(43189511..43230754)
Genome browser
AA seq
1023 aa
AA seq
DB search
MSKMADAFGDELFDVFEGNSTSKPIRETTKDDNTQEDSKRVDDLFKKISSKRPAEIEGNE
GPLKKQRGDDASVEVMPRIQVHKVETVEACQHEVAVPPDHEFVPLKQSSSEPAKEYPFVL
DPFQKEAILCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQKYR
ELYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDK
ERGVVWEETIILLPDNVHYVFLSATIPNATQFAEWVCHLHHQPCHVVYTDYRPIPLQHYI
FPAGGDGLHLVVDENGDFREENFNTAMSVLREAGDAGKGDQRGRKGGSKAHESSIFKIVK
MIMERNFAPVITFSFSRKECEAYGMQMSRLDFNSEEEKKLVEEVFNNAIDSLSDEDKQLP
QVENLLPLLKKGIGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMPARTVLFT
SSRKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDDLMTPSAGKAIVKGSPDPL
NSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLLEKLKSSEDRLHKMSVAE
EDQVASYFRIRQQLDSLGRDLRAYILKPVYLLPFLQPGRLIRVKNKEDDFGWGVVVNFQK
KVDQSGATEETGPLYVVEVLLYLSRDSTRSRSTAHLKPCAKGEKGEMQVVPVLTKLIDSL
SAIRLYIPSDLRSSEHRLSVLKSLQEVEKRFPDGVPLLDPIEDMGIKEKGLHEAIKKTEA
FEHRLYTHALHKDPRLEELYSTYEKKIELGNEVKALRLELKKKKSLLQMDELKCRKRVLR
RLGYATASDVIETKGRVACEISSGDELVITELLFNNVFNDLSPAQCCALLSCFVFQERAS
EMPKLIEELSGPLRLMQDTAKRIARVSKEAKLEIDEETYVESFRPHMMDIVYEWCNGCSF
SKICKMTDIFEGSVIRCMRRLEETLRQMVQASKAIGNTELENKFAEGIRLIKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatggctgacgcgtttggcgacgagctttttgatgttttcgagggaaattcc
acttcgaaaccaatcagagaaactactaaggatgacaatacacaggaagattcaaagagg
gtggatgacttgttcaagaagatctccagcaaaaggccagcagagattgaaggaaatgaa
ggtccactgaagaaacagcgtggtgatgatgccagtgtggaggtgatgcccagaatacag
gtacacaaggtggagactgtggaggcctgtcaacatgaggtggcggtgcccccagaccat
gagtttgtgccgctgaagcagtcgagcagtgagccggccaaggagtaccccttcgtcctg
gaccccttccagaaggaggccatcctatgtctggagaacaaccagtccgtgctggtgtct
gcccacacctccgccggcaagactgtggtggctgtgtacgccattgcaatgtccctgcga
gacaagcagcgtgtgatctacacgtcgcccatcaaggcgctgagtaaccagaagtaccgg
gagctgtatgaggagttccaggacgtgggcctcatgacaggggacgtcaccatcaacccc
accgccagctgtctcgtcatgaccacagagattctgcgaagtatgctgtaccgaggatca
gagatcatgcgtgaggtggcttgggtgatatttgatgagatccattacatgagagacaaa
gagcgcggtgtggtgtgggaagaaaccatcattctgctgccagacaacgtgcactacgtc
tttctgtcggccaccattcccaatgcaacacagtttgctgagtgggtctgtcacctgcat
catcagccgtgtcacgtggtgtacacagactaccgccccatcccactgcagcactacatc
ttccctgccggtggggatggactgcacctggtggtggatgaaaacggagacttccgggag
gagaacttcaacacggccatgtcggtgctccgcgaggccggggacgctgggaagggagac
cagcgcggccggaagggaggctccaaagcccatgaatccagcatcttcaaaatcgtgaag
atgatcatggagaggaactttgctccggtcatcaccttcagcttcagtcgtaaggagtgt
gaggcctatggtatgcagatgtcccgcctcgacttcaactcggaggaagagaagaaactg
gtggaggaagtgttcaacaacgccatcgactccctgtctgacgaggacaaacaactgcct
caggtggagaacttactaccgctgctgaagaaaggaatcggcatccatcactctggcctg
ctccctctgctgaaggagacgatagagatccttttctctgaagggcttatcaaggcgctg
tttgccacagagacctttgccatgggtctcaacatgccggcccgcactgtgctcttcacc
agctcccggaaatttgatggcaaggatttccgctgggtgacgtcaggagagtacatccag
atgagtgggcgagcgggacgccgtgggttggatgaacgtgggatcgtcattcttatggtg
gacgacctcatgaccccgagcgctggcaaggccatcgtcaagggctccccggaccccctg
aactctgcgttccacctgacgtacaacatggtgctgaacctgctgcgtgtggaggagatc
aacccagagtacatgctggagaggtccttctaccagttccagaactacgccgccatcccc
gacctgctggagaagctgaagagcagtgaagaccgtctccacaagatgagcgtggcagag
gaggaccaggtggcgtcctacttccgcatccgccagcagctggacagcctggggcgcgac
ctgagggcctacatcctgaagcccgtctacctcctccccttcctgcagccgggcaggctt
atcagggtgaagaacaaagaggatgactttggctggggtgttgtggtcaacttccagaag
aaagtggatcagagtggtgccacagaggagacgggcccactgtatgtggtggaggtgttg
ctgtacctgagcagggacagcactcgcagccgcagcactgctcacctcaagccctgcgcc
aagggggagaaaggggagatgcaggtggttccggtgctgacgaagctgatagacagtctg
agcgccatccgtctctacatccccagtgacctgcgctcctcggaacaccgcctcagtgtc
ctcaagtctctgcaggaggtggagaagcggttccctgatggcgttcccctgctggaccct
atagaggacatgggcatcaaggagaaggggctgcacgaagccattaagaaaacggaagcc
tttgagcacaggctgtacacgcacgcactgcacaaagaccccaggttggaagagctgtac
agcacctatgagaagaagatagagcttggcaacgaggtgaaggcactgcgcctggaactg
aagaagaagaagtcactgctacagatggacgaactgaagtgtcggaagcgtgtgctgcgt
cgccttggttatgccacagcgtccgacgtcattgagaccaaaggcagggtggcctgcgag
atttctagtggggatgaactggtgatcacagagctgctgttcaacaacgtgttcaacgac
ctgagccccgcccagtgctgcgctctgctcagctgcttcgtcttccaagagcgtgcctcc
gagatgcccaagctgatagaggagctctccgggcctctccgcctcatgcaggacacagcc
aagaggatcgcgcgggtcagcaaggaagccaagctggagattgacgaagaaacgtacgtg
gagtcgttccgtccccacatgatggacattgtatacgagtggtgcaacggatgctccttc
tccaagatctgcaagatgaccgacatttttgagggcagtgtgatccggtgtatgaggcga
ctggaggagacgctcagacagatggtgcaggcctctaaagccatcggcaacacagagctg
gaaaacaagtttgctgaaggtattcgactgatcaagcgagacattgtgtttgctgccagc
ttgtacctgtga
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