Bartonella krasnovii OE 1-1: D1092_02515
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Entry
D1092_02515 CDS
T06421
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
barn
Bartonella krasnovii OE 1-1
Pathway
barn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
barn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1092_02515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
barn03021
]
D1092_02515 (rpoC)
03400 DNA repair and recombination proteins [BR:
barn03400
]
D1092_02515 (rpoC)
Enzymes [BR:
barn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1092_02515 (rpoC)
Transcription machinery [BR:
barn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1092_02515 (rpoC)
DNA repair and recombination proteins [BR:
barn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1092_02515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QEE11903
UniProt:
A0A5B9D016
LinkDB
All DBs
Position
616180..620391
Genome browser
AA seq
1403 aa
AA seq
DB search
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLASMELDKIANDLRLELSETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDIGELHYALE
NKVVTLHTKIKGRVKNIGKDGKEVAKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKMIDHVYRHCGQKETVIFCDRIMQLGFSYACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVDFDPKTGRQRPMNSIY
MMSHSGARGSANQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRT
ALVDILHPVSGEVILEGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYLEASYEGTVEIRNRN
VVRNSEGHLVVMGRNMAILIKDELGKERVVHRVSYGAHIFVDDGDMVKRGQRIAEWDPYT
RPVLTEVEGYVGFEDMVDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIIIHADKE
GKSIAKLYKGGEARYMMSVETILSVELGAHVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTIRFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIPGDNVDRIELDEINDNLIAEGKKPASGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTISQIRRIAAVRDDLIVDEQ
RKSSNNEVAKAMLTNMTAETVAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaagcgccagcgcaaacatttgactct
attcgtatttcgattgcgagtcctgagaaaattttgtcttggtcgtatggtgagattaag
aagcctgagactattaattatcggacttttaaaccagagcgtgatggtcttttttgtgca
cgtatatttggcccgattaaagattatgaatgtttatgcggtaaatacaaacgcatgaaa
tataaggggattatttgtgaaaaatgtggtgtggaagttactctttcgcgtgtacgtcgt
gaacgtatggggcacattgagcttgcagcacctgttgcgcatatatggtttcttaaatcg
ttaccaggccgtatttctacacttttagatttgactttaaaagatattgagcgtgttctt
tattttgaaaattatattgtaaccgaaccagggttgacctctcttaaactccatcagctg
ctttctgaagaagaatatatgcttgcgattgatgagtttggagaagatcagtttacagcg
atgattggcgctgaagctatttacgagcttttagcgagtatggaactcgataagatcgct
aatgatttgcgccttgagttgtctgagacaacttcggaattaaagcaaaaaaagttgatt
aagcggcttaagatcgttgaaaattttcttgaatctgggaataaaccagagtggatgatt
atgaaaacaattccagtcattccaccggatttacgtccattggttccacttgatggtgga
cgttttgcgacgtcagatctcaatgatctttatcggcgcgttatcaatcgtaataaccgt
ttgaaacggctgattgaattgcgtgctcctgggattattgtacgtaatgaaaaacgtatg
gtgcaagaagctgttgatgcattgtttgataatggacgacgtgggcgtgtgattacgggg
gccaataaacgtccattaaaatctctttcagatatgttaaagggtaagcaaggccgtttc
cgtcaaaacctgcttggaaagcgtgttgattactcgggccgttctgttattgtgacaggt
cctgaattaaaattacatcaatgcggtttgcctaaaaaaatggcccttgaattatttaag
ccctttatttatgcgcggcttgatgcaaaaggatattcttcgactgtaaaacaagcaaaa
aagcttgttgaaaaagagcatccagaagtttgggatatcttagatgaggttattcgtgaa
catcctgttttactcaatcgtgcgccaacattgcaccgtttaggaattcaggcttttgaa
cctgtcttgattgaaggaaaagctatccagcttcatccattggtatgtactgcttttaat
gccgattttgatggtgatcaaatggcggttcacgttcctctttctcttgaagcacagctt
gaagctcgtgttttgatgatgtcaaccaataacattcttcatccagctaatggtgccccg
attattgttccctcacaggatatggttcttggtctttactatctttcgattgtttctgaa
aaagaacccggtgagggaatggctttttctgatataggtgagcttcattatgccctggaa
aataaggttgtaacgcttcatacgaagattaaaggccgtgttaaaaatattggcaaggat
ggaaaagaagttgctaaactttatgatacgacacctggtcgtttaattatcggtgagctt
ttgcccaaaaatcctaatatctcatttgatattgtcaatcaagaaatgacaaaaaagaat
atttctaaaatgattgatcatgtttatcgccactgtggacaaaaagagacggttattttt
tgtgaccgtattatgcagcttggtttttcttatgcttgtcgtgcaggaatttcattcggg
aaggatgatatggtcattcctgatagcaagtcacgtttggttgcggaaacagaagctttg
gcgaaggaatacgaacagcaatataatgatggtttgattacacaaggtgaaaaatacaat
aaggttgtagatgcttggggtaaatgtacagaccgtgttgcggatgaaatgatgaaacga
attcaagccgttgattttgatcctaaaaccggtcgtcaacggcccatgaattcaatctat
atgatgtcgcattctggggctcgtggttcagctaaccagatgagacaattggctggtatg
cgtggattaatggcaaaaccatcgggtgaaattattgaaacacctattatttcaaatttt
aaggaaggtctaactgttaacgaatactttaactctacacatggtgcgcgtaaaggcctc
gctgatactgcgttaaaaacggcaaactctggttatctcacacggcgtcttgttgatgtt
gcacaggatgctattatttcagccgttgattgtggtacagcaaaagggcttacgatgcag
ccaattgttgatgcaggacaaattgttgcctctcttgggcaaagaattcttggtcgtaca
gcccttgttgatattttacatcctgtctctggggaggttattcttgaaggtggagcgatg
attgaggaggctgacgttgctaagattgaagaagctggaattcaatctgttcaaattcgt
tctgctttaacatgtgaaacacgtcttggtgtttgtgcaaaatgctatggtcgtgatttg
gcgcgtggaacaccggttaatcagggagaagccgttggtgttattgctgctcagtcaatt
ggtgagccgggaacgcagcttacgatgcgtactttccacttaggaggaactgcacaggtt
gttgattcatcgtatttagaggcatcttatgaaggtacggtggagattcgtaatcgcaat
gtggttcgtaactctgaaggtcatttggttgttatggggcgtaatatggctatccttatc
aaggatgagttaggaaaagaacgtgttgtgcatcgtgttagctatggtgcgcatattttt
gttgatgatggtgatatggttaaacgtggacagcgtatagcagaatgggatccttataca
cgtccagttttaacggaagttgaaggttatgtaggttttgaagatatggttgatggttta
tcagtcactgaaacagctgatgaatctacaggaattacgaaacgtttggtgattgattgg
cgtgctaatccacgtggtgcggagctcaagccagccattattattcacgccgataaagaa
ggtaagtccattgctaaattatataagggaggtgaagcccgttatatgatgtcagtagaa
actattctttctgttgagcttggtgctcatgttaaagctggtgatgttattgctcgtttg
ccaatggaaagtgccaagacgaaagatattacaggggggctaccacgggtggcagagctt
tttgaagcgcgtcgtccaaaggatcatgcgattattgctgaagtcagtggtacaattcgt
tttggtcgtggttataagaataaacgtcgtattatcattgaacccaatgatgaaactctt
gagccagtagaatatttgatcccaaaaggtaagttatttcacttccaagaaggtgatcaa
attgagaagggtgattatatccttgatggtaatccagcccctcatgatattttagcgatt
aagggtgttgaagctttggcatcttaccttgttaatgagattcaggaggtttatcgtttg
cagggggttcttatcaatgacaagcatattgaagtgattgttcgtcaaatgttgcaaaag
gttgaaattactgaatctggagattctggttatattccaggcgataatgttgatcgtatt
gaacttgatgaaatcaatgataatttgattgcagaaggaaagaagcctgcatctggtaat
cccattcttcttggaattacaaaagcttctcttcaaacgccttctttcatttcggcggca
tcatttcaggaaacaacgcgcgttcttactgaagcggcggtttctggcaaaattgatact
ttgcaagggcttaaagagaacgttattgtcggtcgtcttattcctgctggtacaggtggc
acgatttctcaaatccgtcgtattgctgcagttcgtgatgatttgattgtagatgagcag
cgtaagtctagtaataacgaagtggccaaggctatgttgacaaacatgacagccgaaact
gttgctgaataa
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integrated database retrieval system
