Bartonella krasnovii OE 1-1: D1092_04085
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Entry
D1092_04085 CDS
T06421
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
barn
Bartonella krasnovii OE 1-1
Pathway
barn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
barn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1092_04085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barn03019
]
D1092_04085
03009 Ribosome biogenesis [BR:
barn03009
]
D1092_04085
Enzymes [BR:
barn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D1092_04085
Messenger RNA biogenesis [BR:
barn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1092_04085
Ribosome biogenesis [BR:
barn03009
]
Prokaryotic type
rRNA processing factors
D1092_04085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Inos-1-P_synth
Motif
Other DBs
NCBI-ProteinID:
QEE12188
UniProt:
A0A5B9D159
LinkDB
All DBs
Position
complement(960836..963469)
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AA seq
877 aa
AA seq
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MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE
YGGNRHGFLTFSEIHPDYYQIPIADRLALLEEEEAAAVGESPADIFEEETTKNKKRSRRT
KKNAKNNVIAADVENDIASETVTINHTEEILNADVSYDEIEMVGAEDIREELPTYQRKQG
RQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN
VQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAP
CLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPI
FARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLE
AAEEVARQLRLRDLAGLIVIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLL
EMSRQRIRISVLESTTQPCPHCAGTGSIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPV
ATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVISKGTIAESISQSSLEDDNKQ
EIENSVFIKSESIENPPSIETNQKRQRKNHHDEIADHSLSDSHKKEDTLSDDSYRRGRRR
GRRGGRRNQDNSFHQVRIPYAEPVGDFSKKALAEIKAAHRKRSGPSAKSSKPEEIKNDTQ
ALELQQQDEATKVDDTRVKPKKRKTLSSRAVENNLSLESDQNIVEQKSLEEKTKSSSAHK
IRTKKTDKSLHENEDKAPENTKKSTRRTRKKTSSKETTEIQKTLEKETDMKMEKAVELSP
SKIEETINHPVVISSTSNDSPKTARIGWWKRRTLSKN
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaatgcttatagatgcctctcatccggaggaaacacgtgttgttgttgtt
cacggcaacaaaattgaagaacttgattttgaatcagaacataaaaaacagcttaagggg
aatatttatcttgcacgtattacacgtgtagaaccatctctccaagcagcttttgttgaa
tatggtggaaaccgacatggttttttaacattttctgaaattcatcctgactattatcaa
attcctattgctgatcgccttgctcttcttgaagaagaggaagcagcagctgtaggggaa
agtccagcagatatttttgaggaagaaacaactaaaaataaaaaacgctctagaagaaca
aaaaaaaatgcgaaaaataatgtcatagcagccgatgttgaaaatgatattgcatccgaa
actgtaacaattaatcatacagaagagatattaaatgccgatgtttcttatgatgaaatc
gaaatggttggggctgaggacatccgtgaagagctcccgacatatcaaagaaaacaaggg
cgccagtataaaattcaagaagtgattaaacgacgtcaaattttactggtgcaagttatc
aaggaagaacgtggaaataaaggcgctgctcttacaacatatctctctctagctggtcgt
tattctgttctcatgcccaacacagcacgcggtggtggtatttcacgaaaaattacgaat
gtgcaagaccgtaagcgtcttaaagaaatcgtaaaagaattagctgttccaaaaggtatg
ggcgttatcttacgaacggctggtgctaatagaacaaaagctgaaatcaaacgcgattat
gaatatcttatgcggttatgggatacgattcgtactttgacactcgagtcaacggcacca
tgccttgttcatgaagaaagtaatcttataaagcgttctatacgagatctttacaataag
aacattagtgaaattcttgtctctggagaccaaggatatcgtgaagcgaaagactttatg
cgtatgcttatgccaagtcatgcaaaagtcgtgcaaccttatcgcgatcctacgcctatt
tttgcaagaaataatattgaaattcagcttgataaaatgttgcaaccacaggtttcttta
aaatctggggggtatcttgttattaatcaaacagaagcacttgttgctattgacgttaat
tctggacgctctacgaaagaattctctgttgaaaagacagctttacaaacaaaccttgaa
gctgcagaagaagtagcacgtcaattacgcttacgtgatcttgctggtttaatcgtgatt
gattttattgacatgcttgaagaacgcaatgtgcgactggtcgaaaaaaaattaaaagac
tgtttaaaaaatgatcgtgctcgtattcaagttggccatatctcacacttcggcctttta
gaaatgagccgtcaacgtattcgcatatcagttttagaaagtacaacacagccctgcccc
cattgcgcaggaacaggaagtatacgctctgaatcatcaattgctttacatgtcatgcgc
tcaattgaagaatatctccttcataattctcaatataatattattgtgcgcacacccgta
gcaacagcactttatgtgctaaatcacaaacgcaacattcttgttaatttagaaacacgc
tttaaactcaatattagtattgaagcagatgatagtattggaacacaacatcttgttatt
tctaaaggcacaatagcagaaagcatttctcaatcttcattggaagatgacaataagcaa
gaaattgaaaattctgttttcataaaaagtgaatctattgaaaatcctccttccattgaa
acaaatcaaaaacgtcaacgcaaaaatcaccacgatgaaattgctgatcattctctctcc
gactctcataagaaagaagatacattgagtgatgattcttaccgtcgaggacgccgtcga
ggacgccgtggtggtcgacgaaatcaagataatagttttcatcaggttcgcattccttac
gcggaaccagtaggagatttttctaagaaggctttagcagaaattaaagcagcgcatcgc
aaacgtagtggtccatcggctaaatcttctaaacctgaagaaataaaaaatgatacacaa
gccctcgagctacaacagcaagatgaggcaacaaaagttgatgatacaagggttaaacct
aaaaaacgtaaaacactttcttcaagggcagtagaaaataatctttctctagagagtgat
caaaatattgtagaacaaaaatctcttgaagaaaaaactaaaagcagttcggcacataaa
attagaacaaaaaaaacagataaatctcttcatgagaatgaggataaagctcctgaaaat
actaagaagtcaacacgtagaacacgtaaaaaaacatcctctaaagagacaacagaaata
caaaaaacattagagaaagaaactgatatgaaaatggagaaagctgtcgaactttctcct
tctaaaattgaggaaacaattaaccaccctgttgttatttcatcaacatctaatgattcc
cctaaaactgcgcgtattggttggtggaagcgcagaaccctttcaaaaaattaa
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