Bartonella sp. 1-1C: B11Cv2_006070
Help
Entry
B11Cv2_006070 CDS
T05463
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baro
Bartonella sp. 1-1C
Pathway
baro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B11Cv2_006070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baro03400
]
B11Cv2_006070
Enzymes [BR:
baro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B11Cv2_006070
DNA repair and recombination proteins [BR:
baro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B11Cv2_006070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_16
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ATO57375
UniProt:
E6YVJ8
LinkDB
All DBs
Position
662977..666477
Genome browser
AA seq
1166 aa
AA seq
DB search
MAILKKIVIPPNTPSGMIFDGVVDGFEAFALAKLSAEIAQDKPLVYVVRDGTKIAYLQQA
LNFIEPNLSVFQFPAWDCLPYDRVSPGIAITARRLSALAHMSDLRKNPRFSIILTTANTV
IQKLPPCAMIDDQIIHVRIGQCMDMTYLIHYLEQNGFERVATVRDIGEFAVRGGIIDIFS
PSYTEPFRLDFFGQTLETIRVFDPETQRTIANKTELFLQPMSEITLTPEFISRFKSNYIR
SFGVPKKSDMLYEAISQGRRFSGMEHWLPLFYENLNSFFDHCGNLPVVFEHLIEEALIER
YRLIVDYYNSRKERENNQENDVSYHPIEPNLLYWTPEQVLTCVEQCGLRIDFTPFNISRT
LKQTVIHTNATQGYDFIKERNAPDKNVFSSVVDHIASLRSSGKKVLLAFWSEGSMDRLLQ
VLDEHGLQKVEIAKSLQTVKATPRDRILAAVLMIEHGFEIEDFVVIAEQDILGDRLVRSP
KKRKSNAHFISEIASLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGDRLFL
PIENIELLSRYGSESTNVTLDKLGSVGWQTRKARLKKHLLKIAGQLICIAAERAMRSAPA
LTPPVGLFDEFVACFPYEETDDQMDAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEG
TIDIVIGTHALLNDSVSFSRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LSLALSGLRELSLITTPPIDRMAVRTFISPFDLMVIRETLLREYYRGGQSFYVCPRISDL
SYVEEYLKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAELKDGQHDRDNQWSPQIS
LGTAVIIPESFVPDLSLRMGLYRRLTELDNIEQIDEFGAELIDRFGPLPLEVQHLLKVFY
IKILCRKAHVEKIDAGPKGIVIQFRNNYFENSIALVQWVEKQGSMAKIRPDQSIILIRDW
TKVNERLVGVANIMTQLAEMATECAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctatattaaaaaaaattgttattcctccaaatacgcctagtggtatgatttttgat
ggtgttgttgatggatttgaagcttttgcacttgctaaattaagtgcagaaattgctcaa
gataaaccacttgtttatgttgttcgtgatggaacaaaaatagcttatttacagcaagct
ttaaatttcattgaacctaatttatctgtttttcagtttccggcatgggattgtttacct
tatgatcgcgtatcacctgggatagctattactgcacgtcgtctttcagctttggcgcat
atgtcagatctgcgtaaaaatccacggttttcaatcatattaacaacagctaatacagtt
attcaaaaactaccaccttgtgcaatgattgatgatcaaattatccatgtgcgtattggt
caatgtatggatatgacatatttaattcattatttagaacagaatggttttgaacgcgtt
gcaactgtacgtgatattggtgaatttgctgtaaggggaggaattattgatattttttct
cctagttatacggaaccttttcgtcttgatttttttggccaaactttagaaaccattcgc
gtatttgatccagagacgcaacgaacaatagcgaataaaacagaattatttttacagccg
atgagtgaaattactctcactcctgagtttatcagccgatttaaaagcaattatattcgt
tcttttggggtaccaaaaaaaagtgacatgctttatgaggctatttctcaagggaggcgt
ttttcaggtatggagcattggctcccattgttttatgaaaatctcaatagtttttttgat
cactgtggtaatctacctgttgtttttgagcatctcatagaagaagctctcattgaacga
tatcgccttattgtagattattataattcgcgcaaagaacgcgaaaataatcaagagaat
gatgtttcttatcatccaatagagcctaatcttctttattggacacccgaacaagtttta
acatgtgtagagcagtgtggtttgcgtattgattttacaccttttaatatttcacgaaca
ctgaaacagacagttattcatacaaatgctacacagggctatgattttataaaagaacgt
aatgctccagataaaaatgttttttcaagtgtagttgatcatattgcttcattgcgatct
tctggtaagaaagtacttttggctttttggagtgaaggatctatggatcgtttactgcaa
gttcttgatgaacacggtttacaaaaagtagaaattgcaaaatcattgcagaccgtaaaa
gcaacaccgcgtgatcggattttagctgctgttttaatgatagagcatggctttgaaatt
gaagattttgttgttatagcggaacaagatatccttggtgatcgattagtaagatcacca
aaaaagcgtaaaagtaatgcgcattttatttctgaaattgcttccttaaattctggtgat
atcgttgtacatgttgatcatggtattggacagtttattggtctcaaaactatcatgaca
acaggaattttacgtgattgtttagaaatcaactatgctggaggcgatcggctattctta
cccattgagaatattgaacttttatctcgttatggatcagaaagtacaaatgtcacgttg
gataaattaggaagtgttggatggcaaacacgtaaagcacgccttaaaaagcatttatta
aaaattgctggtcaattgatctgtatagctgcagaacgtgccatgcgttcagcacctgct
ttaactccaccagtaggactctttgatgaatttgttgcatgttttccttatgaggaaacg
gatgatcaaatggatgcaattaatgctgttttagatgacttagcatcaggaaaaccaatg
gatcgtttaatctgtggtgatgtaggttttggtaaaacagaagttgctattcgcagtgct
tttgttgcagcattaaatggttatcaagttgctgttgttgtgcccacaactttgctttca
cgacaacattacaaaacttttcttgctcgttttcaagggctgccggttaagattgctcat
ttgtcaaggcttgtaaaagcgagagaattggcgcaaattaaaaaaggtatttcagagggt
acgatcgacatcgttattggaacacatgcattactcaatgattcagtgagtttttcacga
ttaggacttcttatcattgatgaagaacagcactttggagtaaaacataaagagcgtcta
aaagaattaaaaagtgatattcatgttcttacactttcagcaactcctataccaagaaca
ttaagtcttgctttatcggggctacgtgaactttcgttaattacaactccacctatcgat
agaatggctgtacgtacttttatttcaccttttgatttgatggttatacgcgaaacatta
ttacgtgaatattatcgaggtggacagagtttttatgtgtgcccgcgtatttctgatctt
tcttatgtagaagaatatctcaaaacgcatgtgcctgaaattaaatttgttatagcacat
ggacaaatgccagctggacaacttgatgatattatgaatgcgttttatgatggccaatat
gatgtattactttcaaccactatcattgaatcaggtctcgatattccaacagccaataca
ttaattgtacatcgtgctgaaatgtttggtctttctgcactctatcagttgcgtggtaga
gtagggcgttcaaaacaacgtgcttatgcactttttactttcccttctggtaaagtttta
cttcctgcagcagatcgtcgtcttaaagttttgcaatcccttgatacattaggtgcaggt
tttcaactggctagtcacgatatggatattcgaggttcaggtaatttattaggtgaagaa
caatcaggacacatcaaagaagttgggtttgaactctaccaaaaaatgcttgaagaagcc
gttgctgaattaaaagatggccaacatgatagagataatcagtggtcacctcaaatttct
cttggtacagcagtgatcataccagaaagttttgtacctgatttatcattgcgtatgggg
ctttatcgtcgtttaacagaacttgataatatagaacaaattgatgagtttggagctgaa
ttaattgatcgctttggtcctttgccacttgaggttcaacacctacttaaagttttttac
attaaaatattatgtcgaaaagcacatgtagaaaaaatagatgctggaccaaaggggatt
gttatacaatttcgcaataattactttgaaaatagtattgctcttgttcagtgggttgag
aaacaaggatcaatggcaaaaattcgaccagatcaaagcattattttgattcgtgattgg
actaaagtcaatgaaagacttgttggtgtagcaaatattatgacacaacttgcagaaatg
gcaacggagtgcgctgcttag
DBGET
integrated database retrieval system
