Bartonella sp. 1-1C: B11Cv2_006450
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Entry
B11Cv2_006450 CDS
T05463
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
baro
Bartonella sp. 1-1C
Pathway
baro03410
Base excision repair
baro03430
Mismatch repair
baro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
baro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B11Cv2_006450
03430 Mismatch repair
B11Cv2_006450
03440 Homologous recombination
B11Cv2_006450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baro03400
]
B11Cv2_006450
DNA repair and recombination proteins [BR:
baro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B11Cv2_006450
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B11Cv2_006450
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B11Cv2_006450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
QRPTase_C
CDC45
Motif
Other DBs
NCBI-ProteinID:
ATO57411
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All DBs
Position
complement(706508..708373)
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AA seq
621 aa
AA seq
DB search
MCCYDNFANDDLLIIIFLLFIGVLSAVMGRFRYLLNIQSSACNQVWIDALDIDRTNNARA
ISQKFGLPEQLARVLAARNVDESEAMVFINPTLRVLMPNPKKFTDMDCAAERLVKAIINQ
EKIAVFGDYDVDGACSAALLARFLHCFGIIVKIYIPDRIIEGYGPNEQAMKGLVQEGASL
IITVDCGANSPNAIRAARLAGADVIVLDHHQMENIHEEAVALVNPNRPDDFSEQGHLCAA
GVVFITLMWVNRLLREKKWKGALPDLLSMLDLVALATICDVVPLQGVNRAFVVKGLQVAR
SMHNPGIAALAKVARIGEPLNSFHLGFLLGPRINAGGRIGNQALGAYLLSCNDRDEADRI
AQQLDQLNKERQEMEISQLAQAEAYIDSIYQERTIPSSFVIAHKGWHPGIIGILAARLKE
RFFCPVLIIALKEDGSGIGSGRSISGIDLGALVHEAVTLNLLEKGGGHSMAAGFTIQSDK
IEAFREWLEEKISLIVSQLRAEKSLSIDGFLSASGANKDLFDMIEKAGPFGSGNATPVFV
FPSHRLVNLYEVGKGHLRLIISNIEGEKLQGIAFGAVGTTLGKFLSENIGKTIHLAGNLS
LNHWRGSISPQLRVIDAAAVV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgttatgataactttgccaatgatgatttactcattattatatttttgttattt
attggagtattatcagcagtaatgggacgatttcgttatttacttaatattcaatcttct
gcttgtaatcaagtttggattgatgctcttgatattgataggactaataacgctcgtgcc
atttctcaaaagtttggtttaccagagcagcttgctcgggttcttgcagcaagaaatgtt
gatgaatcagaagctatggtttttattaatcccacactgcgtgttttaatgcctaatcca
aaaaaatttacagatatggattgtgcagcggagcgtttagttaaagctattataaaccaa
gaaaaaattgctgtttttggcgattatgatgttgatggtgcttgttcagcagcgctttta
gcacgttttttacattgttttggtataatagtaaaaatctatattcctgatcgtattatt
gaagggtatggtccaaatgaacaggcaatgaaaggattagtacaagaaggagcgagttta
attattacagttgattgtggtgcgaatagtcccaatgctataagagcggcgaggcttgcg
ggtgctgatgttattgttttagatcatcatcaaatggaaaatattcatgaagaagcagtt
gcccttgttaatcctaatcgtcctgatgatttttctgagcaaggacatttatgcgctgct
ggtgttgtatttattacattaatgtgggttaatcgtttattgcgggagaaaaaatggaaa
ggggcgctacctgatcttttaagtatgcttgatcttgttgcattagctactatatgtgat
gttgttccattacaaggcgttaatcgtgcttttgtggttaaagggcttcaggtggctcgt
tctatgcataatcctggaatagctgctttagcaaaagttgcacgtataggagaaccactt
aatagttttcatttgggttttttattggggcctaggatcaatgcaggaggacgtatagga
aatcaggccttaggggcatatttactcagctgtaacgatagagatgaggcagatagaata
gcgcaacaactagaccaacttaataaagaacgccaagaaatggagatatctcaattagct
caagccgaagcttatattgattccatttatcaagaaaggacaataccatcatcatttgta
attgctcataaaggatggcatccgggtatcattggtattcttgcagcccgtttaaaagaa
cgttttttctgtcctgttttgataatagctttgaaggaagatggtagtggtattggatca
ggtcgttcaattagtggtatagatttgggagcgcttgttcatgaagccgttacattaaat
ttattagaaaagggtgggggacacagtatggctgcaggatttacaattcaatcagacaaa
attgaagcttttcgtgaatggttagaagaaaaaatatctttaatagtttcgcaattacgt
gccgagaagtctcttagtatagatggttttctttctgcttctggtgctaataaagatctt
tttgatatgattgaaaaggctggtccttttggctcaggaaatgctacacctgtttttgtt
tttccttctcacaggttagttaatttatatgaagttggaaaaggccatttgcgtcttatt
atttctaatattgaaggcgaaaaattgcaaggaatagcttttggtgcagtaggaacaact
cttggtaagtttctttctgaaaatattggtaaaacaattcatttagctggtaatcttagt
ttaaatcattggagaggaagtatcagcccacaattacgtgttattgatgcagctgcagtg
gtttga
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