Bartonella sp. Raccoon60: Bra60_006070
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Entry
Bra60_006070 CDS
T05326
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
barr
Bartonella sp. Raccoon60
Pathway
barr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
barr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bra60_006070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
barr03400
]
Bra60_006070
Enzymes [BR:
barr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bra60_006070
DNA repair and recombination proteins [BR:
barr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bra60_006070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQX26614
LinkDB
All DBs
Position
652657..656157
Genome browser
AA seq
1166 aa
AA seq
DB search
MAILKKIVIPPNTPSGMIFDGVVDGFEAFALAKLSAEIAQDKLLVYVVRDGTKMAYLQQA
LNFIEPNLSVFQFPAWDCLPYDRVSPGIAITARRLSALAHMSDLRKNPRFSIILTTANTV
IQKLPPCAMIDDQIIHVRIGQCMDMTYLIHYLEHNGFERVATVRDIGEFAVRGGIIDIFS
SSYTEPFRLDFFGQTLETIRVFDPETQRTIANKTELFLQPMSEITLTPEFISRFKSNYIR
FFGVPKKSDMLYEAISQGKRFSGMEHWLPLFYENLNSFFDHCGNLPVVFEHLIEEALIER
YRLIVDYYNARKERENNQENDVSYHPIEPNLLYWTPEQVLTCVEQCGLRIDFTPFNISRT
LKQTVIHTNATQGYDFIKERNAPDKNVFSSVVDHITSLRSSGKKVLLAFWSEGSMDRLLQ
VLDEHGLQKVEIAKSLQTVKATPRDRILAAVLMIEHGFEIEDFVVIAEQDILGDRLVRSP
KKRKSNAHFISEIASLNSGDIVVHVDHGIGQFIGLKTIMTTGILRDCLEINYAGGDRLFL
PIENIELLSRYGSESTNVTLDKLGSVGWQTRKARLKKHLLKIAGQLICIAAERATRSAPT
LTPPVGLFDEFVACFPYEETDDQMDAINAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFLARFQGLPVKIAHLSRLVKARELAQIKKGISEG
TIDIVIGTHALLNDSVSFSRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LSLALSGLRELSLITTPPIDRMAVRTFISPFDLMVIRETLLREYYRGGQSFYVCPRISDL
SYVEEYLKTHVPEIKFVIAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLLPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNLLGEEQSGHIKEVGFELYQKMLEEAVAELKDGQHERDNQWSPQIS
LGTAVIIPENFVPDLSLRMRLYRRLTELDNIEQIDEFGAELIDRFGPLPLEVQHLLKVFY
IKILCRKAHVEKIDAGPKGIVIQFRNNYFENGIALVQWVEKQGSMAKIRPDQSIVFIRDW
TKVNERLVGVANIMTQLAEMATKCSA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctatattaaaaaaaattgttattcctccaaatacgcctagtggtatgatttttgat
ggtgttgttgatggatttgaagcttttgcacttgctaaattaagtgcagaaattgctcaa
gataaactacttgtttatgttgttcgtgatggaacaaaaatggcttatttacagcaagct
ttaaatttcattgaacctaatttatctgtttttcagtttccggcatgggattgtttacct
tatgatcgcgtatcacctgggatagctattactgcacgtcgtctttcagctttggctcat
atgtcagatctgcgtaaaaatccacggttttcaatcatattaacaacagctaatacagtt
attcaaaaactaccaccttgtgcaatgattgatgatcaaattatccatgtgcgtattggt
caatgtatggatatgacatatttaattcattatttagaacataatggttttgaacgtgtt
gcaactgtacgtgatattggtgaatttgctgtaaggggaggaattattgatattttttct
tctagttatacggaaccttttcgtcttgatttttttggccaaactttagaaaccattcgc
gtatttgatccagagacgcaacgaacaatagcgaataaaacagaattatttttacagccg
atgagtgaaattactctcactcctgagtttattagccgatttaaaagcaattatattcgt
ttttttggggtacccaaaaaaagtgacatgctttatgaggctatttctcaagggaagcgt
ttttcaggtatggagcattggctcccattattttatgaaaatctcaatagtttttttgat
cactgtggtaatctacctgttgtttttgagcatctcatagaagaagctctcattgaacga
tatcgtcttattgtagattattataatgcgcgcaaagaacgcgaaaataatcaagagaat
gatgtttcttatcatccaatagagcctaatcttctttattggacacccgaacaagtttta
acatgtgtagagcagtgtggtttgcgtattgattttacaccttttaatatttcacgaaca
ctgaaacagacagttattcatacaaatgctacacagggctatgattttataaaagaacgt
aatgctccagataaaaatgttttttcaagtgtagttgatcacattacttcattgcgatct
tctggtaagaaagtacttttggctttttggagtgaaggatctatggatcgtttactgcaa
gttcttgatgaacacggtttacaaaaagtagaaattgcaaaatcattacaaaccgtaaaa
gcaacaccgcgtgatcggattttagctgctgttttaatgatagagcatggctttgaaatt
gaagattttgttgtcatagcggaacaagatatccttggtgatcgattagtaagatcacca
aaaaagcgtaaaagtaatgcgcattttatttctgaaattgcttccttaaattctggtgat
atcgttgtacatgttgatcatggtattggacagtttattggtctcaaaactatcatgaca
acagggattttacgtgattgtttagaaatcaattatgctggaggcgatcggctattttta
cccattgagaatattgaacttttatctcgttatggatcagaaagtacaaatgtcacgttg
gataaattaggaagtgttggatggcaaacacgtaaagcacgccttaaaaaacatttatta
aaaattgctggtcaattgatctgtatagctgcagaacgtgcgacgcgttcagcacctact
ctaactccaccagtagggctctttgatgaatttgttgcatgctttccttatgaggaaaca
gatgatcaaatggatgccattaatgctgttttagatgacttagcatcaggaaaaccaatg
gatcgtttaatctgtggtgatgtaggttttggcaaaacagaagttgctattcgcagtgct
tttgttgcagcattaaatggttatcaagttgctgttgttgtgcctacaactttactttca
cgacaacattacaaaacttttcttgctcgttttcaagggctaccggttaagattgctcat
ttgtcaaggcttgtaaaagcgagagaattggcgcaaattaaaaaaggtatttcagagggt
acgatcgacattgttattggaacacatgcattactcaatgattcagtgagtttttcacga
ttaggacttcttatcattgatgaagaacagcactttggagtaaaacataaagagcgtcta
aaagaattaaaaagtgatattcatgttcttacactttcagcgactcctataccaagaaca
ttaagtcttgctttatcggggctacgtgaactttcattaattacaactccacctatcgat
agaatggctgtacgtacttttatttcaccttttgatttgatggttatacgcgaaacatta
ttacgtgaatattatcgaggtggacagagtttttatgtgtgcccgcgtatttctgatctt
tcttatgtagaagaatatctcaaaacgcatgtgcctgaaattaaatttgttatagcacat
ggacaaatgccagctggacaacttgatgatattatgaatgcgttttatgatgggcaatat
gatgtattactttcaactaccatcattgaatcaggtctcgatattccaacagccaataca
ttaattgtacatcgtgctgaaatgtttggtctttctgcactctatcagttgcgtggtaga
gtagggcgttcaaaacaacgtgcttatgcactttttactttcccttctggtaaagtttta
cttcctgcagcagatcgtcgtcttaaagttttgcagtcccttgatacattaggtgcaggt
tttcaactggctagtcatgatatggacattcgaggttcaggtaatttattaggtgaagaa
caatcaggacacatcaaagaagttgggtttgaactctaccaaaaaatgcttgaagaagcc
gttgctgaattaaaagatggccaacatgagagagataatcagtggtcacctcaaatttct
cttggtacagcagtgatcataccagaaaattttgtacctgatttatcattgcgtatgagg
ctttatcgtcgtttaacagaacttgataatatagaacaaattgatgaatttggagctgaa
ttaattgatcgctttggtcctttgccacttgaggttcaacacctacttaaagttttttac
atcaaaatattatgtcgaaaagcacatgtggaaaaaatagatgctggaccaaaggggatt
gttatacaatttcgcaataattactttgaaaatggtattgctcttgttcaatgggttgag
aaacaaggatcaatggcaaaaattcgaccagatcaaagcattgtttttattcgtgattgg
actaaagtaaatgaaagacttgttggtgtagcaaatattatgacacagcttgcagaaatg
gcaacaaaatgttctgcttaa
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