KEGG   Bartonella sp. CDC_skunk: Bcsk_014360
Entry
Bcsk_014360       CDS       T11834                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bars  Bartonella sp. CDC_skunk
Pathway
bars03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bars00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bcsk_014360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bars03021]
    Bcsk_014360
   03019 Messenger RNA biogenesis [BR:bars03019]
    Bcsk_014360
Transcription machinery [BR:bars03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Bcsk_014360
Messenger RNA biogenesis [BR:bars03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Bcsk_014360
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB AAA_22 NACHT S1CSD-TOTE-2 Spore_III_AA
Other DBs
NCBI-ProteinID: AQX22041
LinkDB
Position
complement(1613359..1614624)
AA seq 421 aa
MQEMKLQELKSKNPVELVSFAETLEVENASLMRKQELMFAILKKLTLQNVEIIGEGVVEV
LQDGFGFLRSADANYLPGPDDIYLSPTQIQNFSLKTGDTVEGPIRGPKEGERYFALLKVN
KINFEDPEKIRYKIHFDNLTPLYSNERFQMEVQNPTDKDMSSRVIDLISPLGKGQRGLIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI
RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVTDKRTFPA
MDIIKSGTRKEDLLVARQDLHKIFVLRRILAPMSVTDAIEFLIDKLKQTKNNSEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaggaaatgaaattacaagagctaaaaagtaaaaatccagttgaacttgtttctttt
gctgaaacattggaagttgaaaatgcttctttaatgcgcaaacaggaattaatgtttgct
attttaaaaaaacttactttacaaaatgtagaaattataggcgaaggtgttgttgaagtt
ttacaagacggatttggatttcttcgatctgctgatgctaattatcttccaggaccagat
gatatttacctttcaccaacacagatacaaaatttttcattaaaaacaggagataccgtc
gagggaccaatacgaggaccaaaggaaggagaaagatattttgccctccttaaagttaat
aaaattaattttgaagatcctgaaaaaattcgttacaaaattcattttgataatcttact
cctctttattcaaatgagcgttttcaaatggaagtgcaaaatcctacggataaagatatg
tcatcgcgagtaattgatttgatatctcctctaggaaaagggcaaaggggattgattgtt
gcaccaccacgaacaggaaaaacagttttattacagaatattgctcattctattacaaca
aatcatcctgaatgttatcttattgttttattaatagatgaacgtccagaagaagttact
gatatgcaacgttctgtaaaaggggaagttgtttcttctacttttgatgaaccagcaata
cgtcacgtacaagtcgctgaaatggttattgagaaagctaaaagattagttgaatatgga
cgtgatgttgttattcttcttgattcaattacacgtcttggacgcgcatataatactgtt
gttccttcatcaggaaaggttttaacaggtggtgtggatgcaaatgccttacaacgtcct
aagcgtttttttggtgcagctcgtaatattgaagaaggaggatctttaactattatagca
acagctttaatagatacgggaagtcgcatggatgaagttatttttgaagagtttaagggg
actggtaactcagaaattgttcttgaccgtaaagttactgataagcgtacttttccagct
atggatattattaaatcaggaacacgtaaagaagatcttttagtagctcgtcaagattta
cataagatttttgttcttcgtcgtatattagcacctatgagtgtaacagatgctattgaa
tttttaattgataaattaaaacaaacaaaaaataatagcgaattttttgattcaatgaac
acgtaa

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