Bartonella sp. JB15: BJB15x_005240
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Entry
BJB15x_005240 CDS
T05113
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bart
Bartonella sp. JB15
Pathway
bart03030
DNA replication
bart03430
Mismatch repair
bart03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bart00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJB15x_005240
03430 Mismatch repair
BJB15x_005240
03440 Homologous recombination
BJB15x_005240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bart03032
]
BJB15x_005240
03400 DNA repair and recombination proteins [BR:
bart03400
]
BJB15x_005240
Enzymes [BR:
bart01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BJB15x_005240
DNA replication proteins [BR:
bart03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BJB15x_005240
DNA repair and recombination proteins [BR:
bart03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BJB15x_005240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AQX27933
LinkDB
All DBs
Position
593227..596721
Genome browser
AA seq
1164 aa
AA seq
DB search
MQVSGKKRKTLNNKDSLPRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNN
LFGALEFSQYCFADGIQPIIGCQLAIDFGDENCNSSLAKLRHPSDYSSIVLFAASETGYA
HLVRLVSRAYLDKNDTDLPHIKANLLLTHHEGIIALTGGRSGPINSALAEDRKERAVERL
TYLKKIFGDRLYVELQRHGSYDKKVEAALVELAYNYEIPLVATNEAFFLNKEGYAAHDAL
MAVAEGQVVSNPDRKRVTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPI
LPRFIEKSADISCILEAEAKELLNQAAAGLKMRLETIGLAEGYTIADYEQRLNYEISIIT
RMQFSGYFLIVSDFIKWAKAQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PDRVSMPDFDIDFCQERREEVIRYVQKKYGFDQVAQIITFGKLQARAVLRDVGRVLEVPY
RQVDYLTKLVPATPGSNVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTH
AAGIVIGDRSLSELVPMYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDF
VRRKGTKVDLSHIPLNDEVTYAMMSRGETVGVFQVESTGMRKALIGMRPDCIEDIIALLA
LYRPGPMENIPIYNTRKHKEEEIASIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLG
EADLLRRAMGKKIHKEMQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATA
YAIVSYHTAYMKAHHPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIF
EVGENCIYYSLSAVKGVGDVVVDHIVACRGDKPFRDLEDFCERVDPRIVNKRAMESLIYA
GAFDCFNVAREVLLASLLTLNARALRILDNNSSGQIDIFGMIGGLKEPLILSKASPWSPA
EKLHYEFQAIGFYFSAHPLIEYQDVLIKKRVQTWNNFSASVKGGATVARLAGTIVAKKIR
KTRSGKKMGVIQFSDISGQYEAVIFSEGLSVYGDMLEPGKSFIITVIAEDRSEGISLRIE
TIQSLEEQSLQHHKMMRLFIKTTDMLPQIEQNLDSKGNGEVAIILIQENGVREVEIALPK
KYKVDSRVVNAMKALPGIVDVELS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagtgtcaggaaaaaaaagaaaaacactaaataataaagattctctccctcgtttt
attcatttgagggtacattcggcttactcacttcttgagggtgctttaaagatcaagcaa
atcattcagcacgcaatttctgatcatatgcctgctatagctattacggatacaaataat
ttatttggtgctttagaattttcacaatactgttttgctgatggtattcaacctattatt
ggttgtcagcttgctattgattttggtgatgaaaattgtaactcgtctttagctaaattg
cgccatccttctgattattcttccatcgtattatttgctgctagtgaaacaggttatgca
catttggttcgacttgttagtcgcgcgtatcttgataagaatgatactgatcttcctcac
attaaagctaatttgctcttgactcatcatgaaggaattatagctttaactggtggccga
agtggtccgattaattcggctttggctgaagatagaaaagaacgagctgttgagcgttta
acttatttgaagaaaatctttggtgatcgtctttatgttgaattacaaagacatggttct
tatgataagaaggtagaagcagctctcgttgaattagcttataactatgagattcctctt
gttgctactaatgaagcgttttttctcaataaagaaggatatgctgctcatgatgcactt
atggcagttgcggaaggacaagttgtctctaacccagatcgtaaacgtgtgacaccagat
cattatttaaagtcgcaagatgaaatgatttcattgttttctgatcttccagaagctttg
gaaaatagcgttgaaattgctttacgttgtcatgcttatgcaccaattagaaaaccaatt
ttgccccgctttatagagaaatctgcagatatatcttgtattttagaagcagaagctaaa
gagttattaaatcaggctgcagcaggtttaaaaatgcgtcttgagacaattggtttggca
gaaggttatacaatcgcagattatgagcagcggcttaattatgaaatttcaattattaca
cggatgcaattttctggttattttctcattgtttcggattttatcaaatgggcaaaagct
caagatattcccgtcggtccagggcgtggttctggtgctggctcgctcgttgcttatgcg
ttgactattaccgatgttgatcctttgcgcttttctcttttatttgaacgttttcttaat
ccagatcgtgtttctatgccagattttgatattgatttttgtcaagaacgacgcgaagag
gttattcgttatgttcagaaaaaatatggctttgatcaagtagcacagatcattacattt
ggtaaattgcaagcacgtgcagtattgcgtgatgttggtcgtgttttagaagtaccttat
cgtcaggtagactatcttacaaaattagttccagctactcctggtagtaatgttgagtta
gcacaagctattatcgatgaaccaaaatttgaagaagaaaagaaaaaggatcctgttatt
gggcgtatgttggatatagcgcttcaactagaaggactctatcgtcatgcctccactcac
gctgcaggaattgttatcggtgatcgttcattatcagagcttgtgccgatgtatcgtgat
ccacgctctgatatgcctgtaactcaatttaacatgaaatatgttgaacagtctgggttg
gtaaaatttgattttctaggtttaaaaacgcttactgttttaaaaatggctgtggatttt
gttagacgaaaaggtacaaaagtagatttatcgcatattccccttaatgatgaagtgacc
tacgctatgatgtcacgtggtgagactgttggcgtgtttcaagttgaaagtaccggtatg
cgtaaagcacttatcggaatgagaccagattgcattgaagatattattgcgcttttagca
ctttatcgtcctggtccgatggaaaatattccgatatataatacacgtaagcataaagaa
gaagaaattgcctctattcatcctaaaatagaccatttggttaaggaaacgcaaggtgtt
attgtttatcaagaacaagtgatgcagattgctcaagtgcttgctggttattcacttgga
gaagcagatttattgcgtagggctatgggtaaaaaaatccataaggaaatgcaagaacaa
cgtacacgttttgtaagtggggctgttgatggtggtattgataaggatcaagctaatgtt
atctttgatcttttagcgaaatttgcagattacggttttaataagtcgcatgctactgct
tacgcaattgtttcttatcatacagcttatatgaaagcacaccatcctgtagagtttttg
gcagcatctatgacatatgatatgacaaatacggataagctaaatgattttcgacgtgag
gcattaagattaggaattgaggttattgcgccttgtgtgcaaacatcacaccgcattttt
gaagttggtgagaattgtatttattattccctttctgccgttaaaggagtaggagatgta
gttgttgatcatattgtggcttgtcgtggagacaagccttttagggatttggaagatttc
tgtgaacgtgttgatcctcgtattgtgaacaagcgtgctatggaaagtttgatttatgct
ggtgcttttgattgttttaatgttgcacgtgaagttctattggcaagccttttaactctt
aatgcacgtgctcttcgtattcttgataataattccagcggccaaattgatatatttggc
atgataggtggattaaaagagcctttgattttatctaaagcttctccttggtctccagct
gagaaactccattatgaatttcaggcaataggcttttatttttctgctcatcctttgatt
gagtatcaagatgttcttattaaaaaacgtgttcagacttggaacaatttttctgcttca
gttaaaggaggagcaaccgttgcccgtcttgctggaactattgtagcaaaaaaaattcgc
aaaacaagatctggtaaaaaaatgggagttattcagttttctgatataagtgggcagtat
gaagcagttatattttctgaaggactttctgtatatggagatatgctggagcctggaaag
tcttttatcattacagttattgcagaggatcgttctgagggaattagtttacgtattgaa
acaattcaatccttagaagaacagtcactgcaacatcataaaatgatgcgtcttttcata
aaaacaacagatatgcttccacaaattgagcaaaatttagattctaaaggcaatggagag
gtagcaattatactgatacaagagaatggagttcgagaagttgagatagcccttcccaaa
aagtataaagtcgattcacgcgtagtcaatgctatgaaagctcttccgggtattgtagat
gtcgagttgagttaa
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