Buchnera aphidicola Sg (Schizaphis graminum): BUsg_052
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Entry
BUsg_052 CDS
T00087
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bas
Buchnera aphidicola Sg (Schizaphis graminum)
Pathway
bas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BUsg_052 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bas03021
]
BUsg_052 (rpoD)
Transcription machinery [BR:
bas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BUsg_052 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Eclosion
WH_Rok
Motif
Other DBs
NCBI-ProteinID:
AAM67623
UniProt:
P32001
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All DBs
Position
complement(59048..60901)
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AA seq
617 aa
AA seq
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MEHNPKSQLKLLVTHGKEQGYLTYAEVNDHLPEEIIDSEQIDDIIQMINDMGIQVVEEAP
DADDLILNEINTDTDEDAVEAATQVLSSVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQSSVSEYPEAITYLLEQYDRIKTGQIRLSDIITGFVDPNAEEIFSHST
SAIHIGSEILDNITNDSNENEDENEDENEDEDENSIDPELANEKFRELRKQYTNTSNTIK
NKNRNHQDSLLEIYNLSEIFKQFRLVPKQFDHLVNNMRNMMNRVRKQERKIMKLCIEECK
IPKKIFLKIFSGKETDQNWFKKEQSSNQSWSKKLEEIKEKVFSSMKKLKQIEKETGLTIE
QVKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGR
EPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSAT
SESLRSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEVLRSFLDD
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggagcataacccaaagtcacaacttaagctgcttgttacgcatggtaaggagcaaggg
tatttaacctatgccgaagttaatgatcatctaccagaagaaattattgattctgaacaa
atcgatgacattattcagatgattaatgatatgggaattcaagttgtagaagaagcaccc
gacgcagacgatttaattttgaatgaaataaatacagatacagacgaagatgcagtggaa
gctgctacacaagttttatcaagtgttgaatctgaattaggaagaactactgatcctgtt
cgcatgtacatgcgagaaatgggaactgttgaattactaacaagagagggtgaaattgat
atagctaaacgcattgaagaaggcattaatcaagttcaatcttccgtatcagaatatcca
gaagctattacttatcttttagaacaatatgatcgaattaaaactggtcaaatacgatta
tctgatataataacaggatttgtggatccaaatgcagaagaaattttttctcattctacc
tcagcaattcacattggttctgaaattttagataatataacaaatgatagtaatgaaaac
gaagatgaaaacgaagatgaaaacgaagatgaagatgaaaatagcattgacccagaacta
gctaatgaaaaatttagagaattgagaaaacaatatactaatacaagcaatacaattaaa
aataaaaatagaaatcatcaagattcattgttagaaatttataatctttcagaaattttt
aaacaatttaggttagttccaaaacaatttgatcacttagttaataacatgcgtaatatg
atgaacagagttagaaaacaagaaagaaaaattatgaaactatgtattgaagaatgcaaa
atccctaaaaaaattttcttaaaaattttttcaggaaaagaaactgatcaaaattggttt
aaaaaagaacaaagttcaaatcaatcttggtctaaaaaattagaagaaatcaaagaaaaa
gttttttctagcatgaaaaaattaaaacaaatagaaaaagaaactggtttaacaatcgag
caagttaaagatattaacaaaagaatgtctattggagaagcaaaagcaaaaagagcaaaa
aaagaaatggtcgaagctaatttaagattagtaatttctattgcaaaaaaatatactaac
agaggacttcagtttttagacttaattcaagaaggtaatattggccttatgaaagcagta
gataaatttgaatatcgtcgaggatacaagttttcaacttacgcaacttggtggatcaga
caagcaattactcgttctatcgcagatcaagcacgaactattcgaatccccgtacacatg
atagaaacgattaataaacttaatcgtatttctagacaaatgcttcaagaaataggacgt
gaaccaactccagaagaactttctgaaaaaatgttaattcctgaagataagattagaaaa
gttttaaaaatagctaaagaaccaatatctatggaaacacctattggagacgatgatgat
tcacatttaggtgattttatagaagatactacattagaactacctcttgattcagctaca
tctgaaagtctaagatcagcaacacatgatgttttatcaggtcttacagctcgtgaagca
aaggtacttcgcatgcgttttggaattgacatgaatactgatcatactttagaagaagtc
ggaaagcaatttgatgtaactcgagaaagaataagacaaatagaagcaaaagcattaaga
aaacttcgtcatccaagcagatcagaggtactacgtagttttttagacgattag
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