Buchnera aphidicola Sg (Schizaphis graminum): BUsg_360
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Entry
BUsg_360 CDS
T00087
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DEAD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bas
Buchnera aphidicola Sg (Schizaphis graminum)
Pathway
bas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUsg_360 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bas03019
]
BUsg_360 (deaD)
03009 Ribosome biogenesis [BR:
bas03009
]
BUsg_360 (deaD)
Enzymes [BR:
bas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BUsg_360 (deaD)
Messenger RNA biogenesis [BR:
bas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BUsg_360 (deaD)
Ribosome biogenesis [BR:
bas03009
]
Prokaryotic type
rRNA helicases
BUsg_360 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAM67913
UniProt:
Q8K9H6
LinkDB
All DBs
Position
complement(409915..411720)
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AA seq
601 aa
AA seq
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MTHTESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAF
SLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKE
HQTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRFLE
VEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIA
TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTINQTIPEVQLPKIEVLCKRRLERFAKKVQEQLESRDLDEYSALLDKLYSPDDLDIKTL
ASALLKMAQGGRPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERRELKDIDLYR
IEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYAIVELPKGLSKDLLQRLIKTKI
LNKKINIKLLRDIKNYETRTHNRSIFNKDKNNKRRFSDNRLNKSSSIKNETKSSFFRRKS
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgactcatactgaaagcacattttcttttcttggtttaaatccttttattatcaaatct
ttatcaaaaatgggatatgttaaaccttctcctattcaagcggcttgtattccattactt
ctagaaggacgagacgtattaggaatggcacaaacaggaagtggaaaaacagcagcattt
tcattaccattattacataatcttaatattaatttaaaagcgcctcaaattttagtatta
gctccaacaagagagttggctgttcaagtagctgaagctttttcagatttttctaaatat
ataatgggaatacatgtattacctttatatggtgggcaacgatatgaagtacaactacga
gcactgcgacaagggccccaaattgttgtaggaactccaggacgtttattagatcattta
aaaagaggaactcttaatctttcaaatttatatgcattagttttagatgaagcagatgag
atgttacgtatgggttttatagaagatgtagaaacaattatgtctcaaatacctaaagag
catcaaacagctttattttcagcaacaatgccagaagctatacgccgtatttctaaaaga
tttatgaaaaatcctcaagaaatcaagatacaatcgaatatcactacacgtccagatatt
aaacaaagttattggatggtttacggtagaaaaactgatgccttaattcgttttttagag
gtagaagatttttctgcaacaattatttttgtcaaaacaaaaaatgcaactttagaagta
tctgaagctttagaacgtaatggatataatagtgctgcattaaatggagatatgaatcaa
gctttaagagaacaaactttagaacgattaaaaagtggtcgattagatattttaattgcc
acagatgtagctgctcgtggtttagatgttgatcgcattagttttgttattaattacgat
attcccatggattcagaatcttatgttcatcgtataggtcgtacaggtcgagctggtcga
gctggtcgggctttattatttgttgaaaatcgtgaacgtcgattattgcgtaacattgaa
cgtacaataaatcaaactattccagaagttcagttgccaaaaattgaagtcttatgtaaa
agacgtcttgaacgatttgcaaaaaaagtacaagaacaattagaaagtagagatttagat
gaatacagtgcattattagataaattatactctcctgatgatttagatataaagactctt
gcttctgctttattaaaaatggctcaagggggacgacctttgattattaaaaaagattta
ttacaacgtccatctagagagttttcgtttaaagatgatcgcagacgtgaagacaatcat
cgtaataacaatcgaaatcgtcgtgaacgtcgagagctaaaagatatagatttatatcga
attgaagcaggtcgaaatgatggagtagaagtccgtcatatagttggagctattgctaat
gaaggaaatattaatagtcgcaatattggaaatattaaactattttcttcttatgcaatt
gtagaattacctaaaggattatctaaagatttattacaacgtctcataaaaacaaaaatt
ttgaataagaaaataaacataaaattattacgtgatattaaaaattatgaaactagaacg
cataatcgttctatctttaataaagataaaaataataagcgtcgtttttctgataaccgt
ttaaataaatctagtagtattaaaaacgaaacgaaatcatctttttttcgtcgtaaaagt
gtttga
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